Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02089 ATGGAATCAATATCCAATGACCCCTTTGGAATTCTACATTCTTGGAATGCTTCTACCCATTTCTGCGACGGGCATGGAATCACATGCATGCACCAAAGAGAAACAGAGTTGAACTTACCAGCATATCGGTTGCATGGATCCTTGTCTCCTCATGTTGGAACACTTGAGTCAGAAGATAGAGTTGTTGCAATAAAAGTCCTAAACCTTCAAAAGAAAGGAGCTCACAAGAGTTTCATTGCTGAATGTAATGCACTCAAAAACATTAGACATCGAAATCTGGTTAGGATTCTGACATGTTGTTCCAGATTACATGATTACAAAGGTCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCATAGAAAGTTGGTTGCATCCCACAACAGAAAATACAGATCAGCCCAAATCATTGAACCTTGAACAAAGGTTTAATATTATTGTCGATGTTGCTTCAACAATTCATTATCTTCACTGTGAATGTGGGGAGCCTGTCATTCATTGTGATTTAAAGCCTAGCAATGTTCTTCTTGATGAATGCATGGTGGCACACGTGAGTGATTTTGGCTTAGCAAGATTGCTCTCAAGTGTTGGAGTTTCTCTGATGCAAAGTAGCACAATTGGAATAAAGGGGACGGTTGGTTACACGCCTCCAGAGTATGGAATGGGTTCTGAGGTGTCAATTGAAGGTGACATGTATCCTAATGTGGAGAAATGTTTACTTTCACTCTTTAGGATTGCGCTCACTTGTTCAGTGGAATCACCAAAAGAAAGACTGAGCATGGTTGATGTCACAAGGGAACTTAATATAATCAAAAGTTTCTTTCTTACTGGGGTTTAA 849 0.3922 MESISNDPFGILHSWNASTHFCDGHGITCMHQRETELNLPAYRLHGSLSPHVGTLESEDRVVAIKVLNLQKKGAHKSFIAECNALKNIRHRNLVRILTCCSRLHDYKGQEFKALVFEYMKNGSIESWLHPTTENTDQPKSLNLEQRFNIIVDVASTIHYLHCECGEPVIHCDLKPSNVLLDECMVAHVSDFGLARLLSSVGVSLMQSSTIGIKGTVGYTPPEYGMGSEVSIEGDMYPNVEKCLLSLFRIALTCSVESPKERLSMVDVTRELNIIKSFFLTGV. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02089 282 SMART serkin_6 42 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02089 282 Pfam Protein kinase domain 56 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02089 282 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 239 275 - -
Seca9g02089 282 Gene3D Transferase(Phosphotransferase) domain 1 51 280 - -
Seca9g02089 282 ProSiteProfiles Protein kinase domain profile. 1 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02089 282 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Seca9g02089 282 SUPERFAMILY Protein kinase-like (PK-like) 54 272 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02089 Seca-Chr9 33033803 33035713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02089 55 236 Receptor kinase-like Gene Family AT3G47090 54.839 1.04e-66 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca9g02089 Pkinase 3.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02089 - - gmx:100792724 311.997