Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02079 ATGTTTCCTGCATTTTCATTTTGGTTATGTCTTCTCTTCGCTTTCAAATTACTTGGCCCAAACGCAACTGCCGCTACATTTGGCAACGAGACTGACCATTTGGCGTTGTTGAAATTGAAGGAATCAATATCCAATGGCCCCCTTGGAATTCTACATTCTTGGAATGTTTCTACGCATTTCTGCGAGTGGCATGGAGTCACATGCATGCACCAAAGAGTAACAGAGTTGAACCTACCAGCATATCAGCTGCATGGATCCTTGTCTCCTCATGTTGGTAATCTCTCTTTTCTGAGATACCTTAATCTCCAAAACAACAGTTTCTATGGAAAGATCCCACAAGAATTGGGTCGGTTGTTACAATTGCAGCAACTCTCTCTCACCAATAACTCCTTCACAGGGGAGATTCCAACAAACTTGACAAGTTGCTCTCATCTCAGAGACTTATATTTAGAAGGGAATAATCTGATTGGCAAAATACCAATTGAGATTGGCTCTCTTTGGAAGCTTCAATCATTGGCAGTTGGGAAAAATAATTTAACTGGAGGATTCCCTCCATTTATAGGGAATCTTTCATCCCTCATCCGTGTCTCGGTGTCTTATAACTTAGAGGGAGATATTCAACAACAAATATGTCGCCTCAAAAACCTGGCAATGATAGTAGTGGAAGTGAACAAACTATCTGGTACATTTCCTTTTTGCCTTTACAATATGTCATCTCTTATCGTGATCTCAGCTGCAGGAAATTACTTTGATGGCACTCTTCCACCCAACATGTTCAACACCCTTCCTAATCTCCAATTTTTTGCAATTGGTAGGAATCAATTCTCAGGTCCAATCCCCACTTCCGTTTCAAATGTGTCTACCCTTACACTACTTGATATCGTTGTAAACCATTTTGTTGGAAACGTTCCAAGTCTAGGGAGGCTACAAGATCTTCAGTGGCTAAATTTTTTAAAATCATTGACAAATTGTAGTAAGTTGCAAATGTTAGATATATCCTATAATAATTTTGGAGGTAGTTTGCCAAATTCCATGGGTAATCTCTCCACCCAACTCAACCGACTATATGTTGGGGGCAATCATTTATCAGGAAAAATTCCTGCGGAATTAGGAAATCTAATCAACTTAACTCTTTTGACAATGGAAAGTAACCATTTTGAAGGGTTGATTCCAACTACCTTTTGGATGCTTCAGAAGATGCAAGTTTTAGACTTGGGTGGAAACCAACTATCAGGAGTGATACCGACCTTTATAGGAAATCTCAGTCAATTGTTTTATTTGGATTTATCACAAAATATGTTAGAAGGAAATATTCCTCCAAGCATAGGAAACTGTCAAAGGTTACAATACCTCAACCTTTCACAAAACAACCTTAGAGGAACCATACCCTCTGAGGTTTTTAGCCTTTCCTCATTAACAAATTTACTGGACTTGTCACAAAACTCTTTGAGTGGCACTCTCCCTAGTGAAGTGGGCTTGTTAACAAACATCGATTGGCTGGATCTCTCTGAGAACCATCTGTCTGGAAACATTCCTGGAACCATTGGACAATGCATGAGATTGGAGTACCTTTATTTGCAAGGAAATTCCTTCCATGGTATCATGCCATCCTCCTTGGCTTCACTCAAAGGACTTCAACGTGTAGACCTATCACGAAACAGCTTGTCTGGATCAATTCCCAAAGGTTTCCAAAATATTTCATTTTTAGAATACTTGAATGTTTCTTATAACAAGTTGAATGGTGAGGTACCAACAGAAGGTCTCTTTCAAAATGCAAGCAAGTTAGGAGTGGCCGGAAACAATAAGCTTTGTGGAGGTATTCCAGAGTTGCATCTACCGCCATGCCCTGTCAAAGATATGAAACATGCAAAACACCATAAGTTGATGGCAGTGATAGTTAGTGTGGTTGCTTTTCTTCTCATATTATCCCTTGTTCTAACTATCTACTGGATGAGGACAAGAAACAAGAAACCATCTTCTGATGAATCAACAATTGGTCAGTTGTCTAAGGTCTCATACCAAGACCTATATCATGGAACCGATGGGTTCTCGGCTGAAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTCTACAAAGGAAATCTTATGTCAGAAGATGATGTTGTTGCCGTAAAGGTGTTGAACCTTCAAAGGAAAGGAGCTCACAAGAGTTTCATTATTGAATGCAATGCGCTTAAAAATATTAGACATCGAAATCTGGTTAAGATTTTAACATGTTGTTCCAGTACAGATTACAAAGGCCAAGAATTTAAAGCTCTAGTTTTTGAGTACATGAAAAATGGAAGCTTAGAACAATGGTTGCACCCAAGGACAGGAGGTGAAGAACATCCAAGAACACTAGACCTTGATCAAAGATTAAATATCATTATGGATGTTGCTTCTGCATTAAATTATCTTCATCTTGAATGTGAGCAATTGGTCCTTCATTGTGATTTGAAGCCAAGCAATATCCTACTTGATGATGACATGGTTGCTCATGTGAGTGACTTTGGCATAGCAAGACTTGTCACAACCATTGATGGTACCTCCCACAATCAAACTAGTACAATTGGAATAAAAGGGACTGTTGGCTATGCTCCCCCAGAGTATGGAGTAGGTTCTGAAGTGTCCACACATGGTGACATGTATAGCTTCGGGATTCTTGTGTTAGAAATGCTTACTGGAAGAAGACCAACCGATGAAATGTTTGAAGATGGTCAAAATCTGCATAAGTTTGTTGAGATTTCATTTCCTGATAATCTTTTACAGATTTTGGACCCACCTCTTGTACCAACAGATGAAGAATCAACAAGAGAAGAAGAAAAGTGCTTTGTTTCACTTTTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAGAGAAAGAATGAATATAGTGGATGTCATTAGAGATCTAAACAAAATCAGAAAGGCCTTTCTCAATGGTGAGTTTTGA 2955 0.3902 MFPAFSFWLCLLFAFKLLGPNATAATFGNETDHLALLKLKESISNGPLGILHSWNVSTHFCEWHGVTCMHQRVTELNLPAYQLHGSLSPHVGNLSFLRYLNLQNNSFYGKIPQELGRLLQLQQLSLTNNSFTGEIPTNLTSCSHLRDLYLEGNNLIGKIPIEIGSLWKLQSLAVGKNNLTGGFPPFIGNLSSLIRVSVSYNLEGDIQQQICRLKNLAMIVVEVNKLSGTFPFCLYNMSSLIVISAAGNYFDGTLPPNMFNTLPNLQFFAIGRNQFSGPIPTSVSNVSTLTLLDIVVNHFVGNVPSLGRLQDLQWLNFLKSLTNCSKLQMLDISYNNFGGSLPNSMGNLSTQLNRLYVGGNHLSGKIPAELGNLINLTLLTMESNHFEGLIPTTFWMLQKMQVLDLGGNQLSGVIPTFIGNLSQLFYLDLSQNMLEGNIPPSIGNCQRLQYLNLSQNNLRGTIPSEVFSLSSLTNLLDLSQNSLSGTLPSEVGLLTNIDWLDLSENHLSGNIPGTIGQCMRLEYLYLQGNSFHGIMPSSLASLKGLQRVDLSRNSLSGSIPKGFQNISFLEYLNVSYNKLNGEVPTEGLFQNASKLGVAGNNKLCGGIPELHLPPCPVKDMKHAKHHKLMAVIVSVVAFLLILSLVLTIYWMRTRNKKPSSDESTIGQLSKVSYQDLYHGTDGFSAENLIGSGSFGSVYKGNLMSEDDVVAVKVLNLQRKGAHKSFIIECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMKNGSLEQWLHPRTGGEEHPRTLDLDQRLNIIMDVASALNYLHLECEQLVLHCDLKPSNILLDDDMVAHVSDFGIARLVTTIDGTSHNQTSTIGIKGTVGYAPPEYGVGSEVSTHGDMYSFGILVLEMLTGRRPTDEMFEDGQNLHKFVEISFPDNLLQILDPPLVPTDEESTREEEKCFVSLFRIGLACSVESPRERMNIVDVIRDLNKIRKAFLNGEF. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02079 984 SUPERFAMILY Protein kinase-like (PK-like) 656 972 IPR011009 -
Seca9g02079 984 SMART LRR_typ_2 94 118 IPR003591 -
Seca9g02079 984 SMART LRR_typ_2 397 420 IPR003591 -
Seca9g02079 984 SMART LRR_typ_2 566 591 IPR003591 -
Seca9g02079 984 SMART LRR_typ_2 446 469 IPR003591 -
Seca9g02079 984 SMART LRR_typ_2 542 565 IPR003591 -
Seca9g02079 984 SMART LRR_typ_2 373 396 IPR003591 -
Seca9g02079 984 SMART LRR_typ_2 494 518 IPR003591 -
Seca9g02079 984 SMART LRR_typ_2 421 445 IPR003591 -
Seca9g02079 984 Gene3D Transferase(Phosphotransferase) domain 1 765 981 - -
Seca9g02079 984 SUPERFAMILY L domain-like 350 605 - -
Seca9g02079 984 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 765 983 - -
Seca9g02079 984 PANTHER LEUCINE RICH REPEAT KINASE 2 48 201 - -
Seca9g02079 984 Pfam Protein kinase domain 685 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02079 984 Gene3D Ribonuclease Inhibitor 28 199 IPR032675 -
Seca9g02079 984 CDD STKc_IRAK 689 975 - -
Seca9g02079 984 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Seca9g02079 984 Pfam Leucine rich repeat 520 579 IPR001611 GO:0005515
Seca9g02079 984 Pfam Leucine rich repeat 375 434 IPR001611 GO:0005515
Seca9g02079 984 ProSiteProfiles Protein kinase domain profile. 683 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02079 984 ProSitePatterns Protein kinases ATP-binding region signature. 689 712 IPR017441 GO:0005524
Seca9g02079 984 SUPERFAMILY L domain-like 29 317 - -
Seca9g02079 984 FunFam LRR receptor-like serine/threonine-protein kinase EFR 316 621 - -
Seca9g02079 984 Gene3D Ribonuclease Inhibitor 319 616 IPR032675 -
Seca9g02079 984 Gene3D Ribonuclease Inhibitor 200 318 IPR032675 -
Seca9g02079 984 FunFam LRR receptor-like serine/threonine-protein kinase EFR 654 764 - -
Seca9g02079 984 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 66 315 - -
Seca9g02079 984 Gene3D Phosphorylase Kinase; domain 1 646 764 - -
Seca9g02079 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 814 826 IPR008271 GO:0004672|GO:0006468
Seca9g02079 984 SMART serkin_6 683 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02079 Seca-Chr9 32962988 32966141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02079 27 982 Receptor kinase-like Gene Family AT3G47570 45.897 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Seca9g02079 Pkinase 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02079 - - gmx:100801459 1344.33