Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02075 ATGGGGTCCAGTGGCAGCAAAGCCACTTCCTCTTGCAGTTCGTCGTCGTCTTCGGGCAGTTTCCGGAAGGGTCGATCTAAGGGACATAGAGGCTTCCCTTCTTATTGTCTTGGAACAACATCTGGATCTCGTGACAGTGACAATGACGATCAGGTTTGTGATCAGAATAAAGTAAATGGAAGGGATGTTACATACACTAGCGGCAACGAAATAGACTCAGATGGAGTGAAAACAGGGTCTTTTAGAAAGGTTAAATCTGATGAAATGCCTTGTATGCCTTCTAACATTGAGCTTGATGAGTGGGGTCACACTGCATCCAGAACTGGTAGCAGCTCTGCCCATGCTTCTTCAACTCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGTTTTAGCCTCATTCCTGGTAATCTAAGCTTCAGGCTTAGCAGAACCACCAGTTTGGGGTCATCTAGACCTTGTCCCATTTCTTCTGCAAATCACTCAATATTTAACAATGAGGATGAGCTTAATCTGCATCCAGGACCACCTGGCAGCTTGATGAATAGAAATGAAACTCAACAATGTAGTGACTTGCTCAATGCATCTTTTGTTAATCGAGTGCCTGTACAGTATCATGAAGATGCTTCTAATAATTTAAGTTCTAATGCCCCAGCATTGGGTTTGTCTGGCAACTTGCAGAGCAGCCCCACACTTTCCCCTATCCAGGATGTGGTTAGAGATAGATATGCTACAAGAGAAGTGCCAGATGTGAACTTGTTTTCTCCAAGAATTCATACTGAGACAGAAAATGTTGAGACTAGACATACAGATAGACGAAATGGAGCTCGAGAACCTGTTGAACGTAATGTTCGTTTTAGCCGGACTTTAAGTGTTGGAAGGCTACGTGACAGAGTTCTCCGACGATCATCATTATCTGACTTCACCTTTTGCCCTCTGCAACAAGATAGAGAAGTGAGAGATGCTATAGGGGAGAGAGATACAAGAGTGTCACCATCTGATCGTAATGCTGTAAATTCTCATCCTGCATCTGGATATCCTCTTCCCAGCATGTCTAGCTCCTTGTTTAACACCCAAGACTATGAGGTTGAGACTTCTCGCCCAAGAGAAACTAGGTATCAGGATCTACTGGAACATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGATCCCAGGTTCGTGCTCTTCAGCGGTTGGGTAGCCGGTTTGAAAATCTTTCTGGACATGACAGATCATGTATCTTGTCTGGCCAACATAGAAATGGTCGTTGTACATGCAGAATAAGTAGTCGTGATAACAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTTGCTGAAGCCTTATTTGAGGTTCTGGATGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCGACCTTCTGTGTCTTCTATTGGATCTGTTCCTGCACCAAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACTAAGTTGCACAAACATCAGGAAGAACCTGTACAATGCTATATATGCCTTGTGGAGTATGAAGATGGAGACAGCATGCGGGTACTGCCTTGCCATCATGAATTTCATACAACATGTATAGACAAATGGCTGAAGGAGATTCACAGAATTGTGAAGATGAAGAGCATAAACGACGATGTCTCCACACAAGATCTCGACCCTCAAAGCGACCACAGCTCCGATTATTTAGCACACTCTCAACCGCAGCCTCACTCTCAGCCTCAGCCTCGCCGCCCTCGAGGCTTCGCGGCGGCGGCTGCGGCTTCGACGGGGAACAATTCCGGCGGAAAGGGAAAGAAGGAGAGAGAAAAAGAGAAGGAGCGTACGAAGCTCCGGGAACGACACCGTCGAGCCATCACGAGCCGCATGCTCGCTGGACTCCGTCAGTATGGGAATTTCCCTCTGCCGGCGCGTGCTGACATGAACGACGTGCTCGCCGCCCTCGCGCGTGAGGCTGGTTGGGTTGTCGACGCCGATGGCACCACCTATCGCCAGTGCCCCCCTCCTTCTCACATGGGGTCATTTGCGGCAAGGTCAGTTGAAAGTCAACTCTCTGCTGGTTCTTTGAGAACTAGCTCTGTTAAGGAAACTCTAGAGAATCAGCCACCAGTACTAAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCAGTTGTAATTGCAGAAAGGGACTCAAAGAATGGGAAATATGCAAGTGCAAGCCCCATCAATTCAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATGCTGGAGTGCATGAGAATGACTTTACTGGCACACCATATGTTCCTGTATACATAAAGCTTCCAGCTGGTATTATTAACAAATTTTGCCAGTTGATTGACCCTGAAGGTATCAGGCAGGAGCTAATCCATATTAAATCTTTAAATATAGACGGTGTTATTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAACCCGCAGAAATATGTATGGTCTGGTTATAGGGAGCTTTTTAACATTATTAGAGAATTCAAGCTTAATTTACAGGTTGTTATGGCATTTCATGAATACGGAGGGAATGATTCTAGTGATGCACTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAACACTGAATGCCTATCTTGGGGAATTGACAAAGAACGAGTTCTCAAAGGTAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTAGAAATTGGACTTGGAGCATCTGGGGAGCTGAAATACCCTTCTTTTTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTACGCAGAGCAGCTAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAACTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCGGATAATGTTCTGTCTCTTGCAAGCCTTGCATTTGAGGAAACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACCCCTAGTCATGCAGCAGAGTTGACAGCAGGATATCACAACCCCACAAATCAGGATGGATACTCTCCTGTCTTTGAGGTTCTGAAAAAACATGCTGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGAATCATTGGTTGATCCAGAGGGTTTGAGTTGGCAGGTATTAAATTCAGCTTGGGATCGGGGGTTGATAGCCGCTGGAGAGAATGCACTCCTCTGCTATGATAGAGAAGGGTACAGGAGACTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATCACCGGCACTTCTCTTTCTTTGTTTATCAGCAACCATCTTTGCTTCAGGGAAATGTTTGTTTGTCAGAATTGGATTTCTTCATCAAATGTATGCATGGTAAGGATCCTTCAAGTTCACTGGTGAGATGA 3639 0.4466 MGSSGSKATSSCSSSSSSGSFRKGRSKGHRGFPSYCLGTTSGSRDSDNDDQVCDQNKVNGRDVTYTSGNEIDSDGVKTGSFRKVKSDEMPCMPSNIELDEWGHTASRTGSSSAHASSTQSLNPSSRFLSRFSLIPGNLSFRLSRTTSLGSSRPCPISSANHSIFNNEDELNLHPGPPGSLMNRNETQQCSDLLNASFVNRVPVQYHEDASNNLSSNAPALGLSGNLQSSPTLSPIQDVVRDRYATREVPDVNLFSPRIHTETENVETRHTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSSLSDFTFCPLQQDREVRDAIGERDTRVSPSDRNAVNSHPASGYPLPSMSSSLFNTQDYEVETSRPRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCTCRISSRDNNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGDSMRVLPCHHEFHTTCIDKWLKEIHRIVKMKSINDDVSTQDLDPQSDHSSDYLAHSQPQPHSQPQPRRPRGFAAAAAASTGNNSGGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAARSVESQLSAGSLRTSSVKETLENQPPVLRIDECLSPASIDSVVIAERDSKNGKYASASPINSVDCLEADQLMQDIHAGVHENDFTGTPYVPVYIKLPAGIINKFCQLIDPEGIRQELIHIKSLNIDGVIVDCWWGIVEGWNPQKYVWSGYRELFNIIREFKLNLQVVMAFHEYGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEVLKKHAVTMKFVCLGFHLSSQEANESLVDPEGLSWQVLNSAWDRGLIAAGENALLCYDREGYRRLVEMAKPRNDPDHRHFSFFVYQQPSLLQGNVCLSELDFFIKCMHGKDPSSSLVR. 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02075 1212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 473 547 IPR013083 -
Seca9g02075 1212 Pfam Glycosyl hydrolase family 14 796 1176 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 SUPERFAMILY RING/U-box 488 543 - -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 1 22 - -
Seca9g02075 1212 Gene3D Glycosidases 767 1210 - -
Seca9g02075 1212 ProSiteProfiles Zinc finger RING-type profile. 510 540 IPR001841 -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 1 78 - -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 333 352 - -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 556 581 - -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 556 623 - -
Seca9g02075 1212 FunFam Putative RING zinc finger domain superfamily protein 479 554 - -
Seca9g02075 1212 SUPERFAMILY (Trans)glycosidases 771 1203 IPR017853 -
Seca9g02075 1212 Pfam BES1/BZR1 plant transcription factor, N-terminal 606 753 IPR008540 -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 326 352 - -
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1071 1082 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1054 1070 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1020 1039 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 832 850 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1127 1149 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 811 825 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 854 875 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 1089 1112 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 947 969 IPR001554 GO:0000272|GO:0016161
Seca9g02075 1212 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 549 - -
Seca9g02075 1212 Pfam RING-like zinc finger 509 537 IPR001841 -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 104 123 - -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 57 74 - -
Seca9g02075 1212 MobiDBLite consensus disorder prediction 606 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02075 Seca-Chr9 32939500 32952447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02075 582 1203 Glycoside Hydrolase AT5G45300 68.105 0.0 899
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Seca9g02075 Glyco_hydro_14 7.7e-84 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02075 K01177 - gmx:100777004 1211.05