Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02065 ATGATCTTGGTACTTAGTTGGCACCACACCCCACTGCCCAATTTCCACAAGGCCTTGCTTTCCCCTTCTTTTGCAAGAAAAATGAAACAGCCATCCAAACCATGGAGGCCCTTCACATCAAATTGCTGCTCAACTGAGGAACAAACCATCTTTAGAAACTTCAGTAGATGCAAAACCTCACGTTCAGATTTCTCCAAAAACATTGCTCCTTTACCATCATTTAGGAGGCTCTCTTTCTCTGATCTTAGCCGTTCCTCATCCACACGAATCAATGAGGATCTTGCACAGTCTTTTGGTGCTGATTTGTATGATTTTCAGCTGAGTGAGCTGCGTGCCATCACCCAGAATTTTTCAAGCAATTTCTTGCTGGGTGAAGGTGGGTTTGGAACAGTGCATAAGGGTTATATAGATGACAACTTGAGGCTAGGCTTGAAGGCACAACCTGTTGCTGTCAAGCTTTTGGACATTGAAGGCTTACAAGGACACCGTGAATGGCTTGCAGAAGTGATTTTTCTTGGGCAGCTAAGACACCCCAATTTGGTTAAGTTGATTGGGTATTGTTGTGAAGATGAAGAACGACTACTTGTCTACGAATTCATGCCTCGAGGAAGCTTGGAGAATCACTTATTCAGAAGGCTAACATCACTGCCTTGGGGAACAAGATTAAGAATTGCAATAGGTGCTGCTAAAGGCCTTTCCTTCTTGCATGGAGCTGAGAAACCAGTCATTTACAGGGACTTCAAGACCTCCAATGTCTTGCTTGATTCAGACTTCACAGCAAAATTATCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAAGTCACACGTTACAACCAGAGTTATGGGCACTTATGGATATGCTGCCCCAGAATACATCTCAACAGGGCACTTGACCACAAAAAGTGATGTCTATAGCTTTGGGGTTGTCCTGCTAGAACTGCTTACAGGAAGGAGAGCAACGGATAAGACAAGACCAAAGGCTGAGCAAAACATTGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTAAGGTACATTATGGATCCAAGGCTTGCAGGCCAATATTCTGTGAAGGGTACAAAGGAGATGGCACATTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGATAGGCCAAGAATGCCAACAATTGTTGAAACTCTTGAAAGCCTGCAACAGTTCACAGACATGGCAGTTACCAGTGGACACTGGCCAGCATCAACAAAATCTACTAGAAATGGAGCCTCCAACAATAAGGTGAAAACCAGAGCAAGTGCAAATCACAAGAAACCCTCTCCTCCAGTTCCCAGCAAAAAAACTTAA 1338 0.4372 MILVLSWHHTPLPNFHKALLSPSFARKMKQPSKPWRPFTSNCCSTEEQTIFRNFSRCKTSRSDFSKNIAPLPSFRRLSFSDLSRSSSTRINEDLAQSFGADLYDFQLSELRAITQNFSSNFLLGEGGFGTVHKGYIDDNLRLGLKAQPVAVKLLDIEGLQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGTRLRIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSDFTAKLSDFGLAKMGPEGSKSHVTTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRATDKTRPKAEQNIVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGTKEMAHLALQCISLNPKDRPRMPTIVETLESLQQFTDMAVTSGHWPASTKSTRNGASNNKVKTRASANHKKPSPPVPSKKT. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02065 445 FunFam Serine/threonine-protein kinase BIK1 83 199 - -
Seca9g02065 445 Gene3D Phosphorylase Kinase; domain 1 79 199 - -
Seca9g02065 445 Pfam Protein tyrosine and serine/threonine kinase 123 393 IPR001245 GO:0004672|GO:0006468
Seca9g02065 445 SUPERFAMILY Protein kinase-like (PK-like) 99 394 IPR011009 -
Seca9g02065 445 MobiDBLite consensus disorder prediction 406 427 - -
Seca9g02065 445 FunFam Serine/threonine-protein kinase PBS1 200 408 - -
Seca9g02065 445 MobiDBLite consensus disorder prediction 406 445 - -
Seca9g02065 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 242 254 IPR008271 GO:0004672|GO:0006468
Seca9g02065 445 CDD STKc_IRAK 123 396 - -
Seca9g02065 445 ProSitePatterns Protein kinases ATP-binding region signature. 123 152 IPR017441 GO:0005524
Seca9g02065 445 ProSiteProfiles Protein kinase domain profile. 117 400 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02065 445 Gene3D Transferase(Phosphotransferase) domain 1 200 409 - -
Seca9g02065 445 PANTHER OS01G0588500 PROTEIN-RELATED 83 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02065 Seca-Chr9 32812364 32815935 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02065 105 409 Glycoside Hydrolase AT3G07070 51.456 1.32e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca9g02065 PK_Tyr_Ser-Thr 7.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02065 - - lang:109333209 752.666