Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02060 ATGGGCATTTGTCTGATAAAATGGCAATGGCTGTGGCTTCTTTATGTTCTGCTGATACATATTATAATTGATAAAAGTGAAGGGATCAGTCCTGATGGCGAGGTACTTCTCAGTTTCAGGACAGCAGTTGTTAGTTCTGATGGTATCCTGTTACAATGGAGGCCAGAGGATCCTGACCCATGTAAATGGAAAGGAGTGAAATGTGATCCGAAGACCAAGAGAGTAACACATCTGAGTCTATCTCACCATAAGTTAAGTGGGTCTTTGTCACCTGACCTTGGGAAGCTAGAGCATCTGAGGGTTCTTGCTCTTCATAATAACAACTTCTATGGGACAATACCATCAGAATTGGGAAATTGCACTGAATTGCAGGGAATATTTTTACAGGGTAATTACCTTAGTGGAATGATTCCAAACGAAATAGGAAACCTGTCACAGCTTCAAAATTTGGATATATCAAGCAATTCCCTTAGTGGAAATATTCCAGCATCACTTGGGAAGTTATATAATCTCAAAAATTTCAATGTATCAACCAATTTTCTGGTCGGACCAATACCTTCTGATGGTGTCCTTGCCAAGTTTACTGGAAGCTCATTTGTTGGAAATCGTGGTTTGTGTGGATTGCAGATTAATTCAACATGTAAAGATGATGGCTCGCCTGAGACTAATAGTCGATCTACTTCCTCGGACCAAAATCAAATTGGAAAGAGAAAATATTCTGGCCGACTGCTCATCAGTGCATCAGCAACTGTCGGTGCACTACTTTTGGTGGCACTTATGTGCTTCTGGGGTTGTTTTCTTTATAAGAAATTCGGTAAAAATGACAAAATAAGTCTGGCTATGGATGTCTGTGCAGGTGCCTCAATAGTGATCTTTCATGGAGATCTACCATATACCTCGAAAGACATCATTAAGAAACTAGAGACTTTGAATGAGGAACACATAATAGGGATAGGCGGATTTGGAACCGTTTACAAGCTTGCGATGGATGATGGGAATGTATTTGCTTTGAAAAGGATTGTAAAATTAAATGAGGGCTTTGATCGTTTTTTTGAGAGGGAGCTTGAAATTCTTGGTAGCATCAAACACCGTTATCTAGTGAACTTACGGGGATATTGCAATTCACCTACATCAAAGCTGTTAATATATGACTACCTACCCGGTGGTAGTCTTGATGAAGTTCTTCATGTGATGTTTGTGATGAATTTCACAGAAAGATCTGAGCAACTGGACTGGGATTCACGTTTGAATATAATAATGGGAGCTGCCAAAGGGCTTGCCTACTTGCACCATGATTGTTCCCCTAGGATCATACACCGAGACATAAAATCGAGCAATATTTTGCTTGATGGAAAATTGGATGCTCGGGTCTCTGATTTTGGACTTGCCAAACTTCTAGAGGATGAAGAATCTCACATCACCACTATTGTTGCTGGAACGTTTGGTTATCTAGCTCCAGAGTATATGCAAAGTGGCAGAGCAACTGAGAAGACTGATGTGTATAGTTTTGGTGTGCTGACACTTGAGGTGCTGAGTGGAAGACGGCCAACAGATGCATCATTCATTGAAAAGGGTCTAAATATTGTTGGTTGGTTGAATTTTCTTATTACTGAAAATAGGCCGAGGGAAATTGTTGATCCGCAATGTGAGGGGGTGCAGGTGGAGAGCCTTGATGCCTTGCTCTCTGTGGCTATTCAATGCGTTTCTTCAAATCCAGAGGATCGACCTACTATGCACCGAGTGGTCCAGTTACTTGAATCGGAGGTCGTAACTCCGTGCCCAAGTGACTTCTATGATTCCAATTCCGACTAG 1812 0.4134 MGICLIKWQWLWLLYVLLIHIIIDKSEGISPDGEVLLSFRTAVVSSDGILLQWRPEDPDPCKWKGVKCDPKTKRVTHLSLSHHKLSGSLSPDLGKLEHLRVLALHNNNFYGTIPSELGNCTELQGIFLQGNYLSGMIPNEIGNLSQLQNLDISSNSLSGNIPASLGKLYNLKNFNVSTNFLVGPIPSDGVLAKFTGSSFVGNRGLCGLQINSTCKDDGSPETNSRSTSSDQNQIGKRKYSGRLLISASATVGALLLVALMCFWGCFLYKKFGKNDKISLAMDVCAGASIVIFHGDLPYTSKDIIKKLETLNEEHIIGIGGFGTVYKLAMDDGNVFALKRIVKLNEGFDRFFERELEILGSIKHRYLVNLRGYCNSPTSKLLIYDYLPGGSLDEVLHVMFVMNFTERSEQLDWDSRLNIIMGAAKGLAYLHHDCSPRIIHRDIKSSNILLDGKLDARVSDFGLAKLLEDEESHITTIVAGTFGYLAPEYMQSGRATEKTDVYSFGVLTLEVLSGRRPTDASFIEKGLNIVGWLNFLITENRPREIVDPQCEGVQVESLDALLSVAIQCVSSNPEDRPTMHRVVQLLESEVVTPCPSDFYDSNSD. 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02060 603 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 73 586 - -
Seca9g02060 603 SMART serkin_6 310 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02060 603 FunFam LRR receptor-like serine/threonine-protein kinase FEI 1 284 385 - -
Seca9g02060 603 Pfam Protein kinase domain 312 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02060 603 ProSiteProfiles Protein kinase domain profile. 310 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g02060 603 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Seca9g02060 603 Gene3D Ribonuclease Inhibitor 30 215 IPR032675 -
Seca9g02060 603 SUPERFAMILY Protein kinase-like (PK-like) 295 585 IPR011009 -
Seca9g02060 603 Gene3D Phosphorylase Kinase; domain 1 285 385 - -
Seca9g02060 603 SUPERFAMILY L domain-like 31 194 - -
Seca9g02060 603 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Seca9g02060 603 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 386 596 - -
Seca9g02060 603 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Seca9g02060 603 Gene3D Transferase(Phosphotransferase) domain 1 386 592 - -
Seca9g02060 603 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 191 - -
Seca9g02060 603 ProSitePatterns Protein kinases ATP-binding region signature. 316 342 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02060 Seca-Chr9 32774252 32787022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02060 1 594 Receptor kinase-like Gene Family AT2G35620 74.242 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Seca9g02060 Pkinase 5.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02060 - - gmx:100819230 1107.82