Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02043 ATGTCCCTCCTCAGCAGATTCTTCTACAAGAGACCCCCAGATGGCTTGCTCGAATTCGTCGACAGGGTATACGTCTTTGATTCTTGCTTCTCCACCGAAGCATTACCCGACGGAATGTACCAGCTTTACCTTCACGAAATCGTCACTGAGTTGCACGAAGAGTTTCCAGAATCTTCCTTTCTGGCCTTCAATTTTCGCGACGGCGAGAAGCGTAGCAACTTCGCGGAGATCCTATGCGAGTACGATGTTATGGTTATGGATTATCCGAAGCAGTACGAGGGTTGCCCCCTTCTGACACTGTCTTTGGTTCAGCATTTTCTTCGCGTTTGCGAGAGTTGGCTTTCACTTCGGAATCACCAAAACGTGATTTTGTTCCACTGTGAGAGAGGGGGCTGGCCCTTATTGGCGTTCCTTCTCGCTAGCTTTCTGATTTTCAGAAGGGTACACAGTGGTGAACGCAGGACCCTTGAAATTGTGCATAGAGAAGCACCTAAGGGTTTGTTGCAGCTCTTGTCACCCTTGAATCCTTTGCCTTCTCAGCTTCGTTATATTCAGTATGTGGCAAGGAGGAACATTGCCCCTGAGTGGCCCCCACCTGAGCGGGCTCTGTCTCTGGATTGTGTCATTCTCAGAGGAATTCCTAGTTTTGATTCCCAGAATGGATGCAGGCCCATGTTCAGGATTTTTGGGAGGAATCTGCTCACAAAGGGTGGGCTTTCCACCCAGATGATTTATTCCATGCACAAGAAGAAGAAGATCTTGAGGCATTACCGCCAGGCAGATTGTGATGTGATTAAGATTGATATTCAATGTTTAGTGCAAGGAGATGTGGTGTTGGAGTGTGTCCATTTGGATTTGGATCCAGAAAGGGAAGTTATGATGTTTCGTGTGATGTTTAACACTGCATTTATTCGATCCAACATACTGATGCTGAACACTGAAAATTTGGACATTCTTTGGGATTCAAAGGAGCGGTATCCAAAAGGATTCCGGGCTGAGGTTTTGTTTGGGGAGGTTGAAACCATAAGTCCCCCAAGGGCTCCAACAACTATTTTAAATGGTGAGGAGAAAGGTGGATTGCCCATTGAAGCATTTTCAAGAGTTCAAGAACTTTTTAGTGGTGTAGAATGGGTTGACAGTGGTGATGCTGCTGCTTGGCTGCTTAAACAACTTACAGTCTTAAATGATGCAAAAGAGTTTTCAAGGTTGCAAGGTAAAGGAAGCTGGTATTCATCACCTGCTGACTCTGACGATGAAAATAATGAATCAAGCACTGCTGATAGTTCAGATGAGGCCTTTGATGTTATTCCCAAGTTTTCTACTGATCCTTCAAAATTATTGACATCTGACACTCCCTATTCAGTCCATTTAGCTTTTGAGGATAATGGTGGAAATAACACAAATCTCACTTCAAGAACACCTGATCAGTCATTAACTGATAATGTTTCACCACCTCATCATGCTCCAAGTAAGGAATATTCTCCCTGTTCATCTCCACTATCACCAGTTTCTGCTACTCAACATCTGCTTCCAACACCAACACCTCCTCCTCCCCCACCTCCTCCAACAATGTCTAATAAAGGGGGGCCTTTAGCTGCACCGCCACCGCCACCGCCACCACCCCCACCTCCCCCTCCCCCTCCTCTAGGTTTTTCCACTAGTAATGCTACTAGTCCACCTCCACCTCCCCCACCTCCCCCGAGTCACAATGCTAGCAATACTTCTTCATTGCTTTCACCTCCACCACCACCACCACCACCACCCCCTCCTACTATAGGTCATAGTGCCAATAGTGCTCCTAGTCCTCCTCCTCCTCCTCCACCTCCACCTCCTCCAACTCCTGTAACAACAGGTTCAGCCCCGCCACCACCACCTCCTCCTCCTCCAGGACCTGTACGAACAAGTTCAGCCCCACCACCCCCACCTCCACCACCTCCAGGACCTGTAAGAACAGGTTCAGCCCCACCACCTCCACCACCTCCTCCAGGACCTGTACGAACAAGTTCAGTCCCACCACCCCCACCCCCACCTCCTCCAGGTTCTGTAAGAACAGGTTCAGCCCCCCCACCACCACCTCCACCTCCTCCAGGACCTGTACGAACAAGTTCAGTCCCACCACCCCCACCCCCACCTCCTCCAGGTTCTGTAAGAACAGGTTCAGCCCCCCCACCACCACCTCCACCTCCTCCAGGTCCTGCACGAACAGGTTCAGCTCCACCACCACCACCTCCACCTCCTCCCGGTCCTGCACGAACAGGTTTAGCTCCACCCCCACCCCCTCCCCCTCCTCCAGGTCCTATACGAACAGGTCCAGCCATGCCACCTCCACCTCCACCTCCTCCAGGTCCTACTCGAACAGGTTCAGTCCCACCACCTCCACCTCCTCCAGGTGTACGGACAGGTTCAACTCCCCCATCTCCCCCACCAGCTCCTCCAGGATCTGTGCGATTGGGTTCAGCTCCACCGGCACCAAAGCCTCCAAGCGCTCCTCCTCCTCCACCTGGTCGTGGTTTATCATCAGTGCCACCTCCACCTACTGCAGCCAGGGCCCCTGGTGTTCCACCACCACCAGGCAAAGCTTCAGCAACAACAAATGTTGGAAGAGGTCGTGGTACTGCTGGGGTTGCTAACGCTCCTAAGAAAACTTTGTTGAAGCCCCTTCATTGGGTGAAAGTTGCTCGAGCAACAAAAGGGAGTCTATGGGCTGATTCACAGAAACAAGACAGTGAATCAAGGGCCCCTGAAATAGATATATCAGAACTTGAGAGCTTGTTTTCAGCAGCATCTGCTTCTGATGGGAGCAGTACTAAAGGGGGAGGTCGGCGTGGTACTAATATTAACAAACCTGAGAAAGTACAATTGGTTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCTAAAATCAAAATTCCTTTGCCAGATATGCTTAATGCAGTTCTGGCATTGGATTCTTCTGTTCTGGATATTGATCAGGTTGAAAATCTCATCAAGTTCTGTCCCACAAAGGAAGAGATGGAGATGTTGAAGAATTATTCAGGGAACAAGGAAATGCTTGGAAGGTGTGAGCAGTTTTTTATGGAGCTGATGAAGGTTCCACGAGTAGAATCTAAATTAAGGGTGTTTGCTTTTAAAATCACCTTTTCTGCTCAGGTGAGCGATTTAAGGTTGAATTTGAATACAATCAATGATGCAGCCAGAGAGGTGAAAGAATCTGTAAAATTGCGTCAAATAATGCAGACTATTCTTACTTTGGGCAATGCCTTGAATCAGGGAACGGCACGGGGATCAGCAGTAGGGTTCAAATTGGATAGCCTTCTTAAATTATCTGATACTCGTGCTAGAAATAACAAAATGACTTTAATGCATTATTTGTGTAAGCTTCTTGCTGAGAAATTGCCAGAATTGCTAGATTTTGACAAGGATCTTGTCCATTTGGAAGCAGCTTCTAAGATCCAACTAAAAGCATTAGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTGGAGAAAGTTGAGCAAGAACTCACTGCTTCTGAAAATGATGGTACTATATCTTTAGGATTTCGCAAGGTAAGGAATAAAAAATGTAATGTTTCTCTTGCTCAGGTGTTGAAGAATTTTCTTGATATTGCCGAAGCTGATGTGAGGTCACTTATATCGTTGTATTCTGAAGTGGGAAGAAATGCAGATTCTTTGTCGCAGTACTTTGGGGAGGATCCAGCTAGGTGCCCCTTTGAACAAGTGACACAAATACTTGTTGTCTTTGTTAAGATGTTCAACAAGTCAAGGGAGGAGAATGAAAGGCAAGCAGATGCTGAAAAAAAGAAATTAGAGAAAGAAGCCTTGAAGGAGAAGACGGCAAATAACATGCATTCCAAAAGAGATATTGTTCGGTAG 3900 0.4733 MSLLSRFFYKRPPDGLLEFVDRVYVFDSCFSTEALPDGMYQLYLHEIVTELHEEFPESSFLAFNFRDGEKRSNFAEILCEYDVMVMDYPKQYEGCPLLTLSLVQHFLRVCESWLSLRNHQNVILFHCERGGWPLLAFLLASFLIFRRVHSGERRTLEIVHREAPKGLLQLLSPLNPLPSQLRYIQYVARRNIAPEWPPPERALSLDCVILRGIPSFDSQNGCRPMFRIFGRNLLTKGGLSTQMIYSMHKKKKILRHYRQADCDVIKIDIQCLVQGDVVLECVHLDLDPEREVMMFRVMFNTAFIRSNILMLNTENLDILWDSKERYPKGFRAEVLFGEVETISPPRAPTTILNGEEKGGLPIEAFSRVQELFSGVEWVDSGDAAAWLLKQLTVLNDAKEFSRLQGKGSWYSSPADSDDENNESSTADSSDEAFDVIPKFSTDPSKLLTSDTPYSVHLAFEDNGGNNTNLTSRTPDQSLTDNVSPPHHAPSKEYSPCSSPLSPVSATQHLLPTPTPPPPPPPPTMSNKGGPLAAPPPPPPPPPPPPPPPLGFSTSNATSPPPPPPPPPSHNASNTSSLLSPPPPPPPPPPPTIGHSANSAPSPPPPPPPPPPPTPVTTGSAPPPPPPPPPGPVRTSSAPPPPPPPPPGPVRTGSAPPPPPPPPGPVRTSSVPPPPPPPPPGSVRTGSAPPPPPPPPPGPVRTSSVPPPPPPPPPGSVRTGSAPPPPPPPPPGPARTGSAPPPPPPPPPGPARTGLAPPPPPPPPPGPIRTGPAMPPPPPPPPGPTRTGSVPPPPPPPGVRTGSTPPSPPPAPPGSVRLGSAPPAPKPPSAPPPPPGRGLSSVPPPPTAARAPGVPPPPGKASATTNVGRGRGTAGVANAPKKTLLKPLHWVKVARATKGSLWADSQKQDSESRAPEIDISELESLFSAASASDGSSTKGGGRRGTNINKPEKVQLVDLRRAYNCEIMLSKIKIPLPDMLNAVLALDSSVLDIDQVENLIKFCPTKEEMEMLKNYSGNKEMLGRCEQFFMELMKVPRVESKLRVFAFKITFSAQVSDLRLNLNTINDAAREVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKLPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGTISLGFRKVRNKKCNVSLAQVLKNFLDIAEADVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILVVFVKMFNKSREENERQADAEKKKLEKEALKEKTANNMHSKRDIVR. 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02043 1299 PRINTS Pistil-specific extensin-like signature 650 671 IPR003882 -
Seca9g02043 1299 PRINTS Pistil-specific extensin-like signature 502 525 IPR003882 -
Seca9g02043 1299 PRINTS Pistil-specific extensin-like signature 535 553 IPR003882 -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 1266 1299 - -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 927 947 - -
Seca9g02043 1299 Gene3D Formin, FH2 domain 875 1272 IPR042201 -
Seca9g02043 1299 Coils Coil 1261 1286 - -
Seca9g02043 1299 PANTHER FORMIN-J 775 1290 - -
Seca9g02043 1299 SMART PTEN_C2_2 198 1002 IPR014020 -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 927 942 - -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 494 508 - -
Seca9g02043 1299 ProSiteProfiles Formin homology-2 (FH2) domain profile. 874 1286 IPR015425 -
Seca9g02043 1299 Coils Coil 1155 1182 - -
Seca9g02043 1299 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Seca9g02043 1299 Pfam Formin Homology 2 Domain 879 1261 IPR015425 -
Seca9g02043 1299 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Seca9g02043 1299 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 187 IPR029021 -
Seca9g02043 1299 SUPERFAMILY Formin homology 2 domain (FH2 domain) 949 1289 - -
Seca9g02043 1299 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 460 484 - -
Seca9g02043 1299 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 509 570 - -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 458 879 - -
Seca9g02043 1299 FunFam Formin-like protein 874 1272 - -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 577 858 - -
Seca9g02043 1299 Gene3D - 197 342 - -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 405 419 - -
Seca9g02043 1299 SMART it6_source 536 1299 IPR015425 -
Seca9g02043 1299 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02043 Seca-Chr9 32507065 32518402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02043 1 438 FH2 protein (formin) Gene Family AT1G31810 78.132 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02043 - - adu:107487096 895.19