Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02042 ATGGGCTACGATTCGGATAGCCCCTCTCAAGATGGGAGGGATGAAGATGATGATGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTGGGGTTCATGTTTGGGAATGTTGATAATTCTGGTGATCTGGACGTTGATTATCTTGATGAGGATGCAAAGGAGCATCTCTCTGCACTGGCTGACAAGCTGGGTTCATCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACAACCTGACGTTGTTGAACAAGACTGTGGTGAAAAAGCTGAAGATGCAGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCTGAGACTGAAACTGCCAATGAAGAGGAGTATTTATTGCCAAAAAAGGAATTTTTCTCTGCTGAAGTCTCTCTTGAAGCTCTGGAGTCCAGAGCTTCTGTCTTTGATGATGAAAATTATGATGAAGAGTCTGACAAGGAACAAGACTTAGTGAATAACGATTCCAAAGTTGATAACACCTCATTAGCTGGTGTGCAGGAAGAGAGTTTTGTAGGTGCATCTAAAGTAGAGAGCGCTCTCGAGCATGATTTACAAGCAGGCTCACTACAGAGTGAAGAATTGGACACTGATGCACAAAAACTTGAGGAGGAAGGGCCTGAAGTTTTGAAGAAGTCCACGGCTGCACCATTGCCTGTTTTGTATGTGGAAGATGGGATGGCGGTTTTGCGCTTCTCTGAAATCTTTGGTATTCATGAACCTCTTAGAAAGGGAGAAAAGAGAGAGCATCGACATTCTACTCCTGGAGATAGATACAAGTCTTTGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGGATTCCTCAAAGGATTTAGTCAGAGTCTCTCGCTTACTAAACAAGTTTGTGTAGTCAGTAATGATGTATCAGAAAGCAACGATGTTGACTTGGAATTTCCAAAATTTGGATTTCTTCATGGGGATGCCTCAATGGCTTTGAAAGATGATCGGCTACCAAAGGACTCTTGTCTTTGTGCTGAACCAATGAAAGGGGATTTCACTGAAGATCTGCCCTGGAAAGATCATCCTCTTACGTGGGCGAACTTTTACCCTCTTGATCAGCGAGACTGGGAACATGAAATTCTTTGGGGAGATTCTCCTGTTGCAAGTGATAATAATGTTGAGAGCTGTGAAATTTCTGGACCGGAATTGGGAGCTTCTGGTGGTAGTGAAAGAGAAATTGAAAGTGGGATACAGAATCTTATGTTGGAGTCTAAGAAGATACTGGATGAGAAAGATCATACTGTCTTCATGTGCTGCTCTCCCGTCTCATTGGAACCCTTTGGCTCAAGGGATTCTTCTGGATCTAAAACCAATTTAATGTCCAAAAGTCTATTTCATCCCCAACTTCTGAGGCTAGAATCCAGATATGAAGTGGATGGTTCTAGTCTTGCGGATGGAAGAGAGGAAGATATATCTGAGAAGCATAAGCAAAGTGATCAAGTAAAGCGTTTTACCAAAGTTATGTCACAAAACAGAGACCTGATGGAGGGCTCATGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTACGATGAAACCAAAGCTTATATTTGATCTTCGGGATGATCAAATGCACTTTGAAGTTTTGGATAAGAAGGATGGTACACATCTTTGCCTTCATGCTGGGGCTATGATTTTAACTCATTCTTTAAAATCAGGCAGTGGGGACTCTTCTGAGCTACCTGGACATGGAGGTCAATATGGATGGCGATCTGTTGCTAATGACAAACACTATTCAAACCGTAAAACTTCTCAGCAACTGAAATCAAATTCAAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCGCTGAAGCTGCAGACAATGAAATTGAAGTTGAGCAATAAAGATATTGCAAATTTTCATCGGCCTAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACCCATGAAAATTATTATGAAGAGCTTGGGTGGCAAGGGGAGTAAATTGCATGTTGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCTTCCAAAAAGCTAGATTTCAAGGCATCAGAAACAGTGAAAATATTTTATTTAGGAAGGGAACTTGAAGATCACAAATCACTTGCTGCGCAAGATGTTCAACCAAACTCCTTGTTACATCTTGTCCGTACAAAGATACATTTGTGGCCAAGGGCACAAAGGGTTCCTGGTGAGAATAAGTCTTTGCGCCCTCCAGGGGCGTTCAAGAAAAAGTCTGATCTGTCTGTGAAAGACGGACGTGTTTTTCTGATGGAATATTGTGAAGAAAGGCCTTTACTCTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCCAAAATGTTCACCAGATGACCAATCTGGCTCCTTATTACGCAACACGGATAGTACCTTGGGGCACACTATTTCTCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGACCTGAAACCTGGTTGCAGTCAGTCATCACTTGAGACAAATATGTATAGAGCACCTATATTTCCTCATAAAGTTCCATTAACTGACTACCTATTGGTTCGTTCATCAAAGGGAAAGCTGTCATTAAGACGCATCGATAAAATTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTATTATCACCTGGAAGTAAGAATCTTCAGACTTACATGATGAACAGGCTATTGGTACACATGTGCCGTGAATTCCAAGCAGCGGAGAAGCGGAACTTGCCTCCATACATTCGTATTGATGAGTTTCTGTCACAGTTTCCTTACCTGTCAGAAGCCTCATTCCGTAAGAGAATCAAGGAATATGCCAATTTGCAGAGAGGAGCTAGTGGACAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCAGAGGATGAATTGAGAAAAATGGTGACACCAGAGCTTGTTTGTGCCTATGAAAGCATGCAAGCTGGCCTTTACCGTCTAAAACATTTAGGAATAACTGAAACACATCCTACTAATATTTCATCTGCAATGAGTCGGCTTCCTGATGAAGCAATAGCACTGGCTGCTGCATCACACATCGAGAGGGAGCTGCAAATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCCTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTCTCTAGTGCAGTAGTAAAGAAAAAAGCAGCTGCTAGCCGGGGAGGTTCCACTGTTACTGGTACTGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCACGGGAGGTTCTTCTTAAGTTCAATGTTCCAGAGGAAGTCATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACAACTATCAGCAAATATGCCCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAGTGCCAGGAGATTTGGGATAGGCAAGTTCAGAGTCTGACAGCTGTAAATGGTGATGAAAATGAGAGTGATTCAGAAGGAAATAGTGATCTAGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTTTGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACGTGAAAAGGGAGATGGTGTTAAGGGTATTAAAATGAGAAGACGCTCAACTTTGGCCCAGGCAGAGGAAGAAATAGAAGATGAAGCAGCTGAGGCTGCAGAATTATGCAGGTTGCTTATGGATGATGATGAAGCTGACAGGAAGAAAAAGAAGAAAGCTAGGGTTGTGGTAGAAGAAGCAAGACTGATACCAAAGCTGCAATCAAAATTTGTCTATGACAACACGGAACAGGTTAAGCAAATACCAAATACGTTGCAACTAGATGGAACTAATCATTTTAGAGAGGATGCAATTACAGATCTTAGGGAGGAGGACAATTTTCCTGCAAAAAAAAGCAAATCAGCAAAGGTCAATAAAGCAAAGAAGAATGACATTACACCTATTAGTCTACCAAATAAAAAAATCAAATTGAATATGGGAGAAGGAATCAAGGCCCAGGTATTTAAGGAGAAAAAACCATCAAGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGCGAACAAACAAGAACTGTCCAAAATATGGTGAAGATCTGGAAGCACAACTTGAATCTATAGATATGGAGAAATCATCTGGAAAATCTGGCTTTGCTGATCCTTCTGGTCAGTCCCAGCAGAAAGTCCCCTCCAAAAAGTCAACATCAAAAAGCACAACAAAAGTTGCTCCAGTTGTTGACAATTCAGCGAAAATTCCTTTGAAATTCAAATGCAGCTCCACAGAGAAATCTTCTGATAAACCTGCAATAGAAATCCTGCAGAGTTCTGACAAGCCGGTCACTTCTGACTCAGAAACTGCTAAATCTGCTAAGGTTAATAAGATAATTATTCCCAAAAAAATGAAACCAGATGATACACAGGCTGAATCTATTAAGCATGCTATTGTTATACGGCATCCTAGTGATTCAGGTAGAGGTCAGGTTGATTCTCACAAGCTCCCAATTAAAATACGCCCGCCTATGGAAATAGATAGGGAGCAAAGTCACAAAAAGATTATTATAAAGCGTACAAAGGAGGTTGCTGATCTGGAACTGGACAGCCCTGGTGGTAACACAGGACTTGAACACAGAAAAACTAAAAGAATTGTTGAATTGTCGAATTTTGAAAAGCACAGAAAGCAGGAGACCATGTATTCAACTGAAGGTTTGGCGAAATGGAAAGCTAAAGAGGATAGAAGATGGTGGGAAGAGCAAGAGAAACGGAGAAATGAAGCGAGAATCAGAGAAGACAGAGCAAGGAGGCATCACAAAGAAGAAATCAGGATTCTCAAAGAGCAGGAAAGGTTAGATGAAATAAAAAGATATGAAGAAGATATTAGAAGAGAGAGGGAGGAGGAAGAACGACAAAAAGCTAAGAAGAAAAAGAAAAAGAAAAAGCCTGACATAAGAGAAGAGATTTTAGATGACCCCAGAACACGAAGATATGATAAGAGGATGCCGGAAAGAGACAGAAGTGGAAAAAGGAGATCTGTTGTTGAGTTAGGAAAGATTGGTACAGATTATACGCCGCCAACAAAACGCCGAAGAGGGGGAGGGGGGGAGGTTGGTCTGGCAAATATCTTGGAGAGCATCGTGGACACCATTGTGAAAGATAGGGTTGATCTGTCCTATCTTTTCCTGAAACCAGTGTCCAAGAAAGAGGCTCCAGACTACCTGGATGTTATAGAGAGGCCTATGGATCTTTCCAGAATCAGGGAGAGAGTACGGAATATGGAGTACAAGAGCCGAGAAGATTTCAGACACGATATGTGGCAGATCACTTATAATGCCCATAAATATAACGATGGGCGAAATCCTGGAATTCCTCCACTTGCAGATATGCTTTTAGAATATTGTGATTATTTGTTGAATGAGAATGACGATAGCCTCACTGCTGCAGAAGCTGGTATTGAAGTTAGAGATTTCTAG 5679 0.4173 MGYDSDSPSQDGRDEDDDEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDEDAKEHLSALADKLGSSLTDIDLSGKSPQTQPDVVEQDCGEKAEDAVDYEDIDEEYDGPETETANEEEYLLPKKEFFSAEVSLEALESRASVFDDENYDEESDKEQDLVNNDSKVDNTSLAGVQEESFVGASKVESALEHDLQAGSLQSEELDTDAQKLEEEGPEVLKKSTAAPLPVLYVEDGMAVLRFSEIFGIHEPLRKGEKREHRHSTPGDRYKSLDLSDDIVEEDEEGFLKGFSQSLSLTKQVCVVSNDVSESNDVDLEFPKFGFLHGDASMALKDDRLPKDSCLCAEPMKGDFTEDLPWKDHPLTWANFYPLDQRDWEHEILWGDSPVASDNNVESCEISGPELGASGGSEREIESGIQNLMLESKKILDEKDHTVFMCCSPVSLEPFGSRDSSGSKTNLMSKSLFHPQLLRLESRYEVDGSSLADGREEDISEKHKQSDQVKRFTKVMSQNRDLMEGSWLDKIIWEELDQPTMKPKLIFDLRDDQMHFEVLDKKDGTHLCLHAGAMILTHSLKSGSGDSSELPGHGGQYGWRSVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIMKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKASETVKIFYLGRELEDHKSLAAQDVQPNSLLHLVRTKIHLWPRAQRVPGENKSLRPPGAFKKKSDLSVKDGRVFLMEYCEERPLLLSNVGMGARLCTYYPKCSPDDQSGSLLRNTDSTLGHTISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRNLPPYIRIDEFLSQFPYLSEASFRKRIKEYANLQRGASGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAVVKKKAAASRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLTAVNGDENESDSEGNSDLDSFAGDLENLLDAEEFEEGEEGTNDLKREKGDGVKGIKMRRRSTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKARVVVEEARLIPKLQSKFVYDNTEQVKQIPNTLQLDGTNHFREDAITDLREEDNFPAKKSKSAKVNKAKKNDITPISLPNKKIKLNMGEGIKAQVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDLEAQLESIDMEKSSGKSGFADPSGQSQQKVPSKKSTSKSTTKVAPVVDNSAKIPLKFKCSSTEKSSDKPAIEILQSSDKPVTSDSETAKSAKVNKIIIPKKMKPDDTQAESIKHAIVIRHPSDSGRGQVDSHKLPIKIRPPMEIDREQSHKKIIIKRTKEVADLELDSPGGNTGLEHRKTKRIVELSNFEKHRKQETMYSTEGLAKWKAKEDRRWWEEQEKRRNEARIREDRARRHHKEEIRILKEQERLDEIKRYEEDIRREREEEERQKAKKKKKKKKPDIREEILDDPRTRRYDKRMPERDRSGKRRSVVELGKIGTDYTPPTKRRRGGGGEVGLANILESIVDTIVKDRVDLSYLFLKPVSKKEAPDYLDVIERPMDLSRIRERVRNMEYKSREDFRHDMWQITYNAHKYNDGRNPGIPPLADMLLEYCDYLLNENDDSLTAAEAGIEVRDF. 1893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02042 1892 Gene3D - 1772 1885 IPR036427 GO:0005515
Seca9g02042 1892 MobiDBLite consensus disorder prediction 93 114 - -
Seca9g02042 1892 PRINTS Bromodomain signature 1791 1804 IPR001487 GO:0005515
Seca9g02042 1892 PRINTS Bromodomain signature 1821 1839 IPR001487 GO:0005515
Seca9g02042 1892 PRINTS Bromodomain signature 1839 1858 IPR001487 GO:0005515
Seca9g02042 1892 PRINTS Bromodomain signature 1805 1821 IPR001487 GO:0005515
Seca9g02042 1892 Pfam Bromodomain 1779 1854 IPR001487 GO:0005515
Seca9g02042 1892 ProSiteProfiles Ubiquitin domain profile. 671 741 IPR000626 GO:0005515
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1651 1680 - -
Seca9g02042 1892 CDD Bromodomain 1777 1873 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1 29 - -
Seca9g02042 1892 SUPERFAMILY TAF(II)230 TBP-binding fragment 24 62 IPR036741 -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 68 115 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1697 1745 - -
Seca9g02042 1892 Coils Coil 1682 1716 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 597 617 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 70 84 - -
Seca9g02042 1892 Gene3D - 653 743 - -
Seca9g02042 1892 SUPERFAMILY Bromodomain 1758 1878 IPR036427 GO:0005515
Seca9g02042 1892 Coils Coil 192 212 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1493 1527 - -
Seca9g02042 1892 CDD Ubl_TAFs_like 671 742 - -
Seca9g02042 1892 ProSitePatterns Bromodomain signature. 1793 1850 IPR018359 -
Seca9g02042 1892 SMART ubq_7 671 743 IPR000626 GO:0005515
Seca9g02042 1892 FunFam Transcription initiation factor TFIID subunit 1 653 743 - -
Seca9g02042 1892 SUPERFAMILY Ubiquitin-like 641 741 IPR029071 -
Seca9g02042 1892 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 13 1890 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1454 1481 - -
Seca9g02042 1892 Pfam TATA box-binding protein binding 18 65 IPR009067 -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1717 1745 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1493 1526 - -
Seca9g02042 1892 Pfam Ubiquitin family 675 743 IPR000626 GO:0005515
Seca9g02042 1892 Gene3D - 21 71 IPR036741 -
Seca9g02042 1892 ProSiteProfiles Bromodomain profile. 1788 1858 IPR001487 GO:0005515
Seca9g02042 1892 Coils Coil 1266 1293 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1554 1586 - -
Seca9g02042 1892 MobiDBLite consensus disorder prediction 1446 1481 - -
Seca9g02042 1892 Pfam Protein of unknown function (DUF3591) 590 1157 IPR022591 -
Seca9g02042 1892 SMART bromo_6 1767 1878 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02042 Seca-Chr9 32483236 32503669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02042 671 741 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 36.620 7.29e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02042 K03125 - gmx:100780733 3128.19