Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02040 ATGGCAGATGACGATGGTAACAATCCTTTGTCTGACAACGTTGTTGTACTACTCATTGCCATGGGTTCAGCAGCTTTTGTTGTCTCATTGTACCATGTCATAGCCATTTGCTTGTGCCACCAACGCATCACAGATCAAAATCCACCACAACAGCAGCTACCTCAGCTTGCTGGGGCAGAGACACAGAGCAGTTCCTCAGTGGCACACTTGATTCCTACACACAAGTATCACAAGAAAAAACAAAACATGGATGTTGGTGATGGTGATGAAGATGGCATTTGTGCTGTGTGTTTGGGAGATTTTGAGGAAGGTGAGGAATTGAGGACATTGCCTGAATGTATGCACTCTTTCCATGTCCCTTGCATTGATATGTGGCTCTATTCTCATTCAAGCTGCCCTGTTTGCCGTGCCAGTGCCACCCCTTCAGCAGTGCTCCATCAAGACCGTGACTTGAATGCACATCACAGCATAAATATGACACCAGTTGCTTTTCTCCAAACTGGGTTGGCAAGATGGTGA 519 0.4624 MADDDGNNPLSDNVVVLLIAMGSAAFVVSLYHVIAICLCHQRITDQNPPQQQLPQLAGAETQSSSSVAHLIPTHKYHKKKQNMDVGDGDEDGICAVCLGDFEEGEELRTLPECMHSFHVPCIDMWLYSHSSCPVCRASATPSAVLHQDRDLNAHHSINMTPVAFLQTGLARW. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02040 172 SUPERFAMILY RING/U-box 93 142 - -
Seca9g02040 172 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 139 IPR044675 -
Seca9g02040 172 ProSiteProfiles Zinc finger RING-type profile. 94 136 IPR001841 -
Seca9g02040 172 Pfam Ring finger domain 94 136 IPR001841 -
Seca9g02040 172 CDD RING-H2_EL5-like 93 136 - -
Seca9g02040 172 SMART ring_2 94 135 IPR001841 -
Seca9g02040 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 142 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02040 Seca-Chr9 32452829 32453347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02040 16 148 C3H Transcription Factor Family AT5G17600 34.247 1.49e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02040 - - aip:107639941 211.075