Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02034 ATGGAGTCCAGTGAGAATGAAAGCGTGTCAGTTCGAGAGGTCCATGCAAATGGAAGCCGCGTAGTTACATCAGAAATTGAGGCCAAGCTTGATGAAGGAAATATTCAAGAGGCAGAATCTGCATTGCGAGAAGGGTTGTCACTCAATTTTGAGGAAGCAAGGGCTCTTCTTGGGAAGTTGGAGTATCAGAGAGGTAATGTAGAAGCTGCTCTTCGTGTGTTTGATGGGATTGATCTCCAAGCTGCCATACAGCGATTGCAACCCTCCTTTTCTGACAAAGCACAAGTCAAGAAAGGCCGCACTCGCGCTGAATCACCTTCTTCAGTCTCTCAGCATGCTGCTAGTTTGGTGCTTGAAGCCATCTACTTAAAAGCCAAGTCTCTACAAAAACTGGGGAAATATACAGAAGCTGCTAGTGATTGTAAAAGTATTCTTGATGCTGTTGAGAAGATATTTTATCAGGGTATACCTGATATTCAAGTGGATAATAAATTGCAAGAGATAGTCAGCCATGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAAGCTGGTGGCTATGATGAGGCAATCTCAGCTTATAGGCGTGCCCTTCTTAGTCAATGGAACCTTGATAATGATTGCTGTGCAAGAATTCAGAAATCGTTTGTTGTTTTCTTGCTGTACAGTGGGGTGGAAGCAAGTCCACCTAGCTTAGCAGTTCAGATTGAGGGGGCTTATGTGCCTAAAAATAATCTTGAAGAGGCAATTCTGCTCTTAATGATTCTTATAAGAAAGTTTTGCCTTGGTAAGGCGGAATGGGACCCTTCAGTCATGGAACACCTGACTTTTGCACTTTCTGTATGTAGCCAAACTTCTATTTTAGCAAAGCAATTTGAAGACTTGATGCCTGGAGTATACCACCGTATTGATCGCTGGAATTCTTTAGCTTTGTGTCTTAGTGGAGCTGGACAAAATGACAGTGCTTTGAATCTGCTTAGGAAGTCTTTGCACAAACATGAACGACCAGATGACCTTACATCATTATTGTTAGCTGCTAGGATCTGCAGTGAGGACCCGTATCTTGCTGCTGAGGGAGTAGGCCATGCACAAAAGGCAATCAGTAATGCTCATGGCCTGAAAGAGCATTTAAAAGGTGTTGCTCTTCGGATGTTGGGACTTTGTCTAGGAAAGCAAGCTAAGGTTGCATCTTCTGACTTTGAGAGGTCTCGCCTTCAGTCCAAAGCACTGGAATCATTGGAGGAGGCAATTAGATTGGAACGAAACAATTCTGATCTGATTTTTGAGTTGGCTGTTCAATATGCAGAGCATCGAAATTTGACTGCTGCTTTACGCTCTGTAAGGCATTTCTTTAATGAAACTGGTGGCTCTATATTGAAAGCTTGGATATTGCTTGCTCTGATTTTGTCTGCACAACAAAAATATCTGGAAGCTGAAGTGGTGACAGATGCTGCTTTAGATCAGACTGCAAGATGGGAGCAGGGGCCACTGCTTAGGCTGAAAGCAAAGCTAAAGATCTCACAATCACGACCTATGGATGCTATTGAAACTTATCGCTACCTTCTTGCATTGGTTCAAGCCCAAAAGAAATCCTTTGGGTCTTTCCGAATGAGTTCGAAGGCAGAGGATGATAAAGTAAATGAATTTGATATATGGCATGGTCTGGCAAATTTATATGCTAGCCTTTCTCATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCCAGGGAGTTGAAGGAGTACTCTTCTGCGGTAACGCACACCGAAGGTGTTTTGTTTGAAGGACGTGGGCAAAGTCAAGAAGCTCTTAATGCTGCTATTAATTCTGTCCTAATTGAACCAAACTATGTTCCAAGCAAGATCTTGATGGGTGCTTTGGTTCAGAAAATTGAACCAAAGGCATTGCCTGCTGCAAGAAGCATGCTGTCTGATGCACTTAGAGTAGAACCCACCAACCGCAAGGCTTGGTATTACTTGGGATTGGTTCACAAGCAAGATGGCCGAATGGCTGATGCTGCTGACTGCTTCCAAGCAGCTTACATGCTTGAAGAATCTGATCCCATTGAAAGTTTCAGCGCTATACTTTGA 2085 0.4336 MESSENESVSVREVHANGSRVVTSEIEAKLDEGNIQEAESALREGLSLNFEEARALLGKLEYQRGNVEAALRVFDGIDLQAAIQRLQPSFSDKAQVKKGRTRAESPSSVSQHAASLVLEAIYLKAKSLQKLGKYTEAASDCKSILDAVEKIFYQGIPDIQVDNKLQEIVSHAVELLPELWKQAGGYDEAISAYRRALLSQWNLDNDCCARIQKSFVVFLLYSGVEASPPSLAVQIEGAYVPKNNLEEAILLLMILIRKFCLGKAEWDPSVMEHLTFALSVCSQTSILAKQFEDLMPGVYHRIDRWNSLALCLSGAGQNDSALNLLRKSLHKHERPDDLTSLLLAARICSEDPYLAAEGVGHAQKAISNAHGLKEHLKGVALRMLGLCLGKQAKVASSDFERSRLQSKALESLEEAIRLERNNSDLIFELAVQYAEHRNLTAALRSVRHFFNETGGSILKAWILLALILSAQQKYLEAEVVTDAALDQTARWEQGPLLRLKAKLKISQSRPMDAIETYRYLLALVQAQKKSFGSFRMSSKAEDDKVNEFDIWHGLANLYASLSHWKDAEICLQKARELKEYSSAVTHTEGVLFEGRGQSQEALNAAINSVLIEPNYVPSKILMGALVQKIEPKALPAARSMLSDALRVEPTNRKAWYYLGLVHKQDGRMADAADCFQAAYMLEESDPIESFSAIL. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02034 694 PANTHER PROTEIN NPG1 5 691 IPR043376 -
Seca9g02034 694 SMART tpr_5 378 422 IPR019734 GO:0005515
Seca9g02034 694 SMART tpr_5 302 335 IPR019734 GO:0005515
Seca9g02034 694 SMART tpr_5 582 615 IPR019734 GO:0005515
Seca9g02034 694 SMART tpr_5 652 685 IPR019734 GO:0005515
Seca9g02034 694 SMART tpr_5 548 581 IPR019734 GO:0005515
Seca9g02034 694 SMART tpr_5 118 151 IPR019734 GO:0005515
Seca9g02034 694 SMART tpr_5 458 491 IPR019734 GO:0005515
Seca9g02034 694 Pfam Tetratricopeptide repeat 636 679 - -
Seca9g02034 694 SUPERFAMILY TPR-like 49 198 IPR011990 GO:0005515
Seca9g02034 694 SUPERFAMILY TPR-like 118 443 IPR011990 GO:0005515
Seca9g02034 694 Gene3D Tetratricopeptide repeat domain 627 691 IPR011990 GO:0005515
Seca9g02034 694 ProSiteProfiles TPR repeat profile. 652 685 IPR019734 GO:0005515
Seca9g02034 694 SUPERFAMILY TPR-like 403 678 IPR011990 GO:0005515
Seca9g02034 694 Gene3D Tetratricopeptide repeat domain 453 617 IPR011990 GO:0005515
Seca9g02034 694 Gene3D Tetratricopeptide repeat domain 282 452 IPR011990 GO:0005515
Seca9g02034 694 Gene3D Tetratricopeptide repeat domain 15 201 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02034 Seca-Chr9 32410571 32416998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02034 3 694 Calmodulin-binding Proteins AT2G43040 71.695 0.0 991
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02034 K21843 - gmx:100814609 1164.83