Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02027 ATGGCCGTGAATCTGACACACGGGGCGATCGAGACTATTTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTCGCAGCAGAACAGCACCGTCGAGAGGTACCGCCTTGTGCTCTCTGACGGTTCGTATTATTATCAGCAAGGGATGCTCGCCAGGCAGAAGAACGAGTTGGTCCGTTCTCGAAGTTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCGGTTCATCTGCAACGTTGTCCAGGGCCGCAAGATTATTATCATCATTGACCTAGATGTTTTACTGGACAAATGTGACTTGATTGGAAAACCTGTTGCACTACCAAAAAATACATATGCGGAAGCTGCCACTGGTCAATCAAGAATAACCTCTGGGAATTCACATTCTTTAAATGGTAATATGAATGGATTTCTGATGAATGGACTCTTTGATCAGACACCTCCTTCCTTCTTCACTCCGGTTATGTATGCTGAGTTATACCGGACTCTTATTGAAAGAGAAGAAGCCCTAGTGAATAAGGTGGCTGAAGTCCCTCTTGTGGCATCCCCTGTCAGAGAGAGAAGGACAGGAGCTCTTGATCATCTGGGTGCTCATGGAAGGATCCGAAAGGTGTTTGCTGCTTATAATGTGAAAAGACTGCATGCTCGCGTAGGTCGGCTAGCAAAGAGGCTGAAGGAAACTCAAAAGGAGTTACTGAAGCTGAAGGCAGAGAAGGAGGGTGCCAATGCTTCCAAGACCATGTTCGCTAAATAG 777 0.4723 MAVNLTHGAIETICSDNFSSEELQPVLQVIDLKSQQNSTVERYRLVLSDGSYYYQQGMLARQKNELVRSRSLQKGSVVRLTRFICNVVQGRKIIIIIDLDVLLDKCDLIGKPVALPKNTYAEAATGQSRITSGNSHSLNGNMNGFLMNGLFDQTPPSFFTPVMYAELYRTLIEREEALVNKVAEVPLVASPVRERRTGALDHLGAHGRIRKVFAAYNVKRLHARVGRLAKRLKETQKELLKLKAEKEGANASKTMFAK. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02027 258 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Seca9g02027 258 PANTHER RPA-RELATED PROTEIN RADX 32 124 IPR040893 GO:0003697
Seca9g02027 258 Coils Coil 218 252 - -
Seca9g02027 258 CDD RPA1N 8 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca9g02027 258 Gene3D - 3 116 IPR012340 -
Seca9g02027 258 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca9g02027 258 FunFam Replication protein A subunit 4 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02027 Seca-Chr9 32347879 32349945 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02027 1 113 Core DNA Replication Machinery Family AT4G19130 50.427 3.48e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02027 K07466 - gmx:100778597 167.933