Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02025 ATGGACCGTACTGACAAGCAGCAGCAGCAGCAATTGTCCTTGGCCAAGAGTGCCAGGCATAGATGCAGTGAATGGGTTTTTCGGGATGTACCAAGTGATATAACTATAGAAGTGAGTGGAGGAACATTTTCATTACACAAGTTTCCTCTTGTCTCCAGAAGTGGGAGAATTAGGAGACTAGTTGCAGAACACAGGGATTCTGATATCTCAAGAGTTGAGCTTCTTAATCTACCAGGAGGTGCTGAATGCTTTGAGTTGGCTGCCAAATTCTGTTATGGCATTAGCTTTGAGATCACATCAAAAAATGTTGCTCAGCTATGTTGTGTTTCTGATTACCTTGAAATGACTGAAGATTTCTCAAAAAGACAATCTTGGTTCCCGTGCTGA 387 0.4238 MDRTDKQQQQQLSLAKSARHRCSEWVFRDVPSDITIEVSGGTFSLHKFPLVSRSGRIRRLVAEHRDSDISRVELLNLPGGAECFELAAKFCYGISFEITSKNVAQLCCVSDYLEMTEDFSKRQSWFPC. 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02025 128 Gene3D Potassium Channel Kv1.1; Chain A 7 123 IPR011333 -
Seca9g02025 128 ProSiteProfiles BTB domain profile. 32 100 IPR000210 GO:0005515
Seca9g02025 128 Pfam BTB/POZ domain 31 117 IPR000210 GO:0005515
Seca9g02025 128 SUPERFAMILY POZ domain 22 117 IPR011333 -
Seca9g02025 128 PANTHER OS12G0117600 PROTEIN 28 121 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02025 Seca-Chr9 32339338 32341105 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02025 15 123 EF-hand Containing Proteins AT2G47860 46.970 4.08e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca9g02025 BTB 1.5e-06 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02025 - - ahf:112727702 223.016