Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02022 ATGGCCGTGAATCTGACACAAGGGGCGATCGAGACTATGTGCAGCGACAACTTCTCTTCGGAGGAGTTGCAGCCGGTACTGCAGGTTATCGACTTGAAGTTGGTGCAGTCGCAGCAGAACAGCGCCGCCGAGAGGTACCGTCTCATGGTCTCTGACGGTTCGTATTATCAGAAAGGGATGCTCGCCACGCAGAAGAACGAGTTGGTCCGTTCTCGAAGCTTGCAGAAAGGTTCCGTTGTTAGGCTCACTCAGTTCATCTCCAACGTTCTCCAGGGCCGCAGCAGGATTATTATCATCGTCGACCTAGATGTTTTACTGGACAAATGTGACGTGATTGGAGAACCTGTTGCACTACAAGAAAATACATCTGCGGAATCTGCCACTGGTCAATCACGAATAACCTCTGGGAATTCACAGTCTTTAAATGGTAGTTCACATGCAAGTGGCATGGCTGCCAGACCAAATATGTCTAGGCCTTATCCGGATCATCCAAAAGTGAATCTCCCTTCTAATAGTGTTCATTCTAGCAGTTCTGACTCTGTAAGATATGGTGCTGCTAATGCTCCTTCTACTTATGGTAGTCCACCTGCAAGTGGCTTGACTGCTAGACCAAATATGTATGGGCCTTCTCCGGATCATCCAAAAATGAATCTTCCTTCTAACAGTGTTCACTCTGGCCGTCCTGACTCTGTAAGATATGATGCTTCTAATGCTCCTCTTACTTATCCTAAAGCAGAGCCTGGTGGCAGTTCGCCTAGATCAGCACCATTCAATGGGTCTTATGGTGATCAGAACACTGGTTTCCGCAATCCCCAGTATGAGGCTTTAAGGCCAATGCAAAATTCTTATGCCCGTCCACCTCAGCCTATGTACCGACAGCCATCTCCAATGTACACTAACAGAGGTCCTGTTGGAAGAAATGAAGCTCCCCTCAGGATACTTCCAATTGCTGCATTGAATCCATACCAGAATACGTGGGCGATCAAAGCCAGAGTAACGGCGAAGGCAGAACTCAGACACTATAATAATGCCCGAGGTGATGGAAAAGTATTTTCTTTTGATCTTCTGGATTCTCATGGTGGCGAAATTCGGGCAACTTGCTTTAATGCTGTGGCTGATCAATTTTATAATCTAATTGAAGTTGGTAAAATCTATCTGGTTTCCAGGGGAAGCATAAAGCCAGCTCAAAAGAATTTTAATCACCTCCGTAATGATCAAGAGATAACTCTTGATATTACTTCGATTATACAGCCGTGCCTTGATGATGATAACTCAATTCCAAAGCAGACATTTTCTTTTTGTCCCATTAGCGAAATTGAAAGCATGGAAAACAACAGCATTTTGGATGTGATTGGTGTGGTGTCTTCTATTAGTCCTACAGCTTCAATTATGAGAAAAAATGGCACTGAAACACAGAAGAGAACTCTCCAGTTGAAAGATATGTCTGGCCGAAGCGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAGACTGCAAACTATTTGCGATTCTGGGACATTTCCAGTTTTGGCTATAAAAGCTGCTAGAGTAAATGATTTCAATGGAAAATCTGTTGGGACCATAGCCTCCAGCCAGTTATTTGTAGAACCTGATTTTGCAGAGGCTTGTACACTCAGAGAATGGTTTGACAAGGAAGGGAAGAATGTCCCAACTCTCTCTATTTCCAGAGAAACATCTAGTATTGGTAAAACTGATGTGCGGAAGACTATATCTCAGATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTATCTGTGCAAGTGTTTCATTCATTAAAGTTGATAATTTCTGCTACACAGCTTGTCCTATCATGATAGGAGATAGGCAATGCAACAAAAAGGTTACCAATAATGGAGATGGGAAATGGCGTTGTGACAGGTGTGATCAGTCTGTTGATGCTTGTGATTATAGGTACATTCTGCAAATCCAGATACAAGATCACACTGGCGTAACATGGGTTACTGCTTTCCAGGAGGGTGGTGAGGAGATCATGGGTCTACCTGCAAAAGATTTGTATTATCTGAAATTCGAAGAACAAGGTGATGAAAAATTTGCAGAAATCATCCGTAAGGTTCTCTTCAATAAATATGCGTTCAAGTTAAAAGTTAAGGAGGAAACATTCAGTGATGAACAGCGTGTTAAGTCAACGGTAGTAAAAGCAGAGAAGGTAAACTTTGCATCTGAATCTAGAATTCTGTTGGGTTTGATTGATAAACTGAAGTCTGAGGAAGCAGAAGGTGCCACTCCTAACTCTGTCATCAATAATACTGGACTGGGGAGCGTTGGATCTGGACAAGCTATGCCACCTATTTATAATCCTATAAAGAGCAACACTAATGCCAATAGAGATTATGGGATGCCGGCAAATCAAGTGGGTCAATATGGAAACCAATATAGCAGTTCTTTTGGTTCATCAGGGGCTCCTGGTTCATACATGTCATGTAACAACTGTGGAGGCTCTGGTCATAGCTCTGTCCTATGCCCAAATACTACAAATCGACCTGGACAGTTTGCAGGAGGCTCCTATGGAAACAGGGTGTCTGCTGCATCAAGTGGTGCCTCTGGTGAATGCTTTAAGTGCCATCAAACTGGCCACTGGGCAAAAGACTGTCCTGGTATTAGTGCAGCACCCCCAGCGTATGGAAGCAGTAATGCAATGCAAGGAAGATATGGGGTTGCTCAAAGGCAACAATTTGGAGGATACTGA 2754 0.4343 MAVNLTQGAIETMCSDNFSSEELQPVLQVIDLKLVQSQQNSAAERYRLMVSDGSYYQKGMLATQKNELVRSRSLQKGSVVRLTQFISNVLQGRSRIIIIVDLDVLLDKCDVIGEPVALQENTSAESATGQSRITSGNSQSLNGSSHASGMAARPNMSRPYPDHPKVNLPSNSVHSSSSDSVRYGAANAPSTYGSPPASGLTARPNMYGPSPDHPKMNLPSNSVHSGRPDSVRYDASNAPLTYPKAEPGGSSPRSAPFNGSYGDQNTGFRNPQYEALRPMQNSYARPPQPMYRQPSPMYTNRGPVGRNEAPLRILPIAALNPYQNTWAIKARVTAKAELRHYNNARGDGKVFSFDLLDSHGGEIRATCFNAVADQFYNLIEVGKIYLVSRGSIKPAQKNFNHLRNDQEITLDITSIIQPCLDDDNSIPKQTFSFCPISEIESMENNSILDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQRLQTICDSGTFPVLAIKAARVNDFNGKSVGTIASSQLFVEPDFAEACTLREWFDKEGKNVPTLSISRETSSIGKTDVRKTISQIKDEKLGTSEKPDWISICASVSFIKVDNFCYTACPIMIGDRQCNKKVTNNGDGKWRCDRCDQSVDACDYRYILQIQIQDHTGVTWVTAFQEGGEEIMGLPAKDLYYLKFEEQGDEKFAEIIRKVLFNKYAFKLKVKEETFSDEQRVKSTVVKAEKVNFASESRILLGLIDKLKSEEAEGATPNSVINNTGLGSVGSGQAMPPIYNPIKSNTNANRDYGMPANQVGQYGNQYSSSFGSSGAPGSYMSCNNCGGSGHSSVLCPNTTNRPGQFAGGSYGNRVSAASSGASGECFKCHQTGHWAKDCPGISAAPPAYGSSNAMQGRYGVAQRQQFGGY. 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02022 917 Gene3D - 564 755 IPR012340 -
Seca9g02022 917 SUPERFAMILY Nucleic acid-binding proteins 313 426 IPR012340 -
Seca9g02022 917 CDD RPA1_DBD_B 447 554 - -
Seca9g02022 917 Gene3D - 795 892 - -
Seca9g02022 917 MobiDBLite consensus disorder prediction 168 198 - -
Seca9g02022 917 Gene3D - 311 422 IPR012340 -
Seca9g02022 917 Gene3D - 425 563 IPR012340 -
Seca9g02022 917 FunFam Replication protein A subunit 564 755 - -
Seca9g02022 917 MobiDBLite consensus disorder prediction 282 304 - -
Seca9g02022 917 SMART c2hcfinal6 829 845 IPR001878 GO:0003676|GO:0008270
Seca9g02022 917 SMART c2hcfinal6 872 888 IPR001878 GO:0003676|GO:0008270
Seca9g02022 917 SUPERFAMILY Nucleic acid-binding proteins 1 113 IPR012340 -
Seca9g02022 917 Pfam Replication factor-A protein 1, N-terminal domain 5 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca9g02022 917 NCBIfam replication factor-a protein 1 (rpa1) 289 754 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g02022 917 Gene3D - 3 120 IPR012340 -
Seca9g02022 917 FunFam Replication protein A subunit 425 563 - -
Seca9g02022 917 Pfam Replication factor-A C terminal domain 597 747 IPR013955 -
Seca9g02022 917 CDD RPA1_DBD_C 581 754 IPR047192 -
Seca9g02022 917 Pfam Zinc knuckle 872 887 IPR001878 GO:0003676|GO:0008270
Seca9g02022 917 FunFam Replication protein A subunit 4 119 - -
Seca9g02022 917 CDD RPA1_DBD_A 315 417 - -
Seca9g02022 917 SUPERFAMILY Nucleic acid-binding proteins 578 755 IPR012340 -
Seca9g02022 917 CDD RPA1N 8 105 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca9g02022 917 Pfam Replication protein A OB domain 436 539 IPR031657 -
Seca9g02022 917 SUPERFAMILY Retrovirus zinc finger-like domains 821 888 IPR036875 GO:0003676|GO:0008270
Seca9g02022 917 FunFam Replication protein A subunit 312 422 - -
Seca9g02022 917 SUPERFAMILY Retrovirus zinc finger-like domains 858 890 IPR036875 GO:0003676|GO:0008270
Seca9g02022 917 SUPERFAMILY Nucleic acid-binding proteins 431 560 IPR012340 -
Seca9g02022 917 PANTHER REPLICATION FACTOR A 1, RFA1 326 738 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca9g02022 917 MobiDBLite consensus disorder prediction 120 151 - -
Seca9g02022 917 MobiDBLite consensus disorder prediction 253 270 - -
Seca9g02022 917 MobiDBLite consensus disorder prediction 120 270 - -
Seca9g02022 917 ProSiteProfiles Zinc finger CCHC-type profile. 873 887 IPR001878 GO:0003676|GO:0008270
Seca9g02022 917 Pfam OB-fold nucleic acid binding domain 327 415 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02022 Seca-Chr9 32302990 32306533 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02022 1 857 Core DNA Replication Machinery Family AT5G45400 52.278 0.0 871
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02022 K07466 - gmx:100778597 1226.85