Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02013 ATGTTTCAATGCATAAGTTGTTCGAAGCAGGCAAAGGCAGAGGATGGAGAAGGTCGTGGAACTGGGAGTGGTACGCCGAAGAGAAAGGAAGCCGTCAAAAGCCTGACTTCGCAGTTAAAAGATTTCGTGCTGAAGATCTCAGGTGTTAAGTCAAAAGCAAACACAGGCTCAACTTCAGATAGGGGAAAGAAACCATTGGCTGATTATGAGACACTCTCTGAAGGGGTTCAATACCCCTACATGGGAGGTGTAGGGTCAGGTTCCACCCCTCCCTGGGACCTGAGAAGTTCCCTTCCTGGTGGGAGCAGGTCGGAAAATAGATACATAGGGGCACCTAGTGGTAACATGACCCCAGGAAGGACTGAACCAGTAGCAGCTGCCCAAGAGGGGTTGGGGGAAGAGGGTGAAGCCATAGAATGGGTGGCTCATGTGGAGCCAGGAATCCAAATCACATTTGAGACCATTCCTACTGGGGGACATATTCTCAAGAGAATTCGCTTTGACCAAGAGATGTTTGACAGGAGCCAAGCTCAAGCATGGTGGGGTATGAATTATGAAAGGATCATGGAACTTTACAATGTCCAGAGTTTGAACCATAATGTTATCAGCACTTCTGAGAGGTTTGAGGATGAGGTAATTAATCCACAATTCACAAATCCATATAATGGGGGTAATAGCCCTGTGTCTGCATGGGTAAATGCAACAGCAAGGACTCACTACTACCAAAGCTCAGCCTCAGGAATCACTTTGGACAACATTGGTGGTGGTGAAAACTTTGAAGAAGGAGGGCCATCCAATGAAGCTGCAAGAATATCCAACTCTTCTATACAGGAGGAGGAGGCTGAACTCAACATTGACAATGAGCCAGAATGGATTGAGCAGGATCAGCCTGGAGTGTTGCTCACAATCAGGGCTCTCCCTGATGGCACAAAAATCCTTTGCCGTGTCAGGTTCAGCCGCAGGATATTTAATGAAGAAAGTGCCAAGCTATGGTGGGAGGCTAACAGGGAGAGGATTGAAGGAGATTATCTGTGA 1035 0.4744 MFQCISCSKQAKAEDGEGRGTGSGTPKRKEAVKSLTSQLKDFVLKISGVKSKANTGSTSDRGKKPLADYETLSEGVQYPYMGGVGSGSTPPWDLRSSLPGGSRSENRYIGAPSGNMTPGRTEPVAAAQEGLGEEGEAIEWVAHVEPGIQITFETIPTGGHILKRIRFDQEMFDRSQAQAWWGMNYERIMELYNVQSLNHNVISTSERFEDEVINPQFTNPYNGGNSPVSAWVNATARTHYYQSSASGITLDNIGGGENFEEGGPSNEAARISNSSIQEEEAELNIDNEPEWIEQDQPGVLLTIRALPDGTKILCRVRFSRRIFNEESAKLWWEANRERIEGDYL. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02013 344 ProSiteProfiles BRX domain profile. 138 193 IPR013591 -
Seca9g02013 344 ProSiteProfiles BRX domain profile. 289 344 IPR013591 -
Seca9g02013 344 Pfam Transcription factor regulating root and shoot growth via Pin3 139 192 IPR013591 -
Seca9g02013 344 Pfam Transcription factor regulating root and shoot growth via Pin3 289 342 IPR013591 -
Seca9g02013 344 MobiDBLite consensus disorder prediction 8 33 - -
Seca9g02013 344 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 344 IPR044532 -
Seca9g02013 344 MobiDBLite consensus disorder prediction 12 26 - -
Seca9g02013 344 Pfam Transcription factor BRX N-terminal domain 25 48 IPR027988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02013 Seca-Chr9 32186059 32188456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02013 1 344 Major Intrinsic Protein MIP AT1G31880 43.820 1.13e-80 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02013 - - ccaj:109789470 301.597