Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g02011 ATGAACCTTCCTCCGCCGCCGGTGATGTGGCAACCGCCCTTTACGGTGGCTCAATGGCAGGAGCTGGAGCACCAAGCTCTCATCTTCAAGTACCTCAAGGCGGGTCTCTCCGTTCCCCCTGACCTCCTCGTACCCATTCGCAAGAGTCTTCAATTGATGTCTCACCCTTCTCTGGGGTATTATGGGAAGAAGATAGACCCTGAACCTGGTAGGTGCAGGAGAACCGATGGGAAAAAGTGGAGGTGCTCCAGGGATGCTCACCCTGATTCTAAGTACTGCGACCGCCACATGATACGACGCCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAATCTCAACCTCAATCTTCTTCTTCTTCTGCTACTTCACAACTTGCTTCTTCTACTGGGAGCACAACCACTGCCTCTGCCTCTGCAACTGCAACAACCTTCAACACCCTCCCTTTGCACACTAATGGTTCCAGGGAAGGTTTCAGCTTCACCCTTGGGAACACACACCCTCACCTTCAGATGGACCCTCTCTCTCTTTCTGGTCAGGGTTGCAAGAAACCTTACAGGTTTGGACTGAACTCCGCAGCAGATGAGCACAACATCTTACAGAAAGATCTGGGAAGTGTGAAGTATCAAGGTTATGACTTTACCTCAGATAGTATGTGGTCTCATATGTCCCAGATTCCATCAAACACTGTTTCAGAATCAAGAAGTGTTTCTACTATGGTTGGCAACTCCTACCAACAGCGAACAATGCGAGACACTGAGCTGTTGAACCTCGACACTGGAAGGTCCAAGGAACTTAGCTTTAGTGGTGAGTTATGTTCAGCAGGGGGTTTAAAACAAGATTATCATCAGTCCCAGCAGTCTCTCTTCAGTGACTGGCATTGGAAGAAGGATTTAGGTTCCTCTGCTATTGAGTATAGGCCCAACAAGGGTTTTAACTGCAACCCAGATGTCAATGTTGATTCAAATGGTTCTGTATAA 978 0.4836 MNLPPPPVMWQPPFTVAQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSHPSLGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESQSQPQSSSSSATSQLASSTGSTTTASASATATTFNTLPLHTNGSREGFSFTLGNTHPHLQMDPLSLSGQGCKKPYRFGLNSAADEHNILQKDLGSVKYQGYDFTSDSMWSHMSQIPSNTVSESRSVSTMVGNSYQQRTMRDTELLNLDTGRSKELSFSGELCSAGGLKQDYHQSQQSLFSDWHWKKDLGSSAIEYRPNKGFNCNPDVNVDSNGSV. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g02011 325 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca9g02011 325 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Seca9g02011 325 MobiDBLite consensus disorder prediction 66 88 - -
Seca9g02011 325 PANTHER GROWTH-REGULATING FACTOR 5 13 292 IPR031137 GO:0005634|GO:0006351|GO:0032502
Seca9g02011 325 MobiDBLite consensus disorder prediction 108 135 - -
Seca9g02011 325 MobiDBLite consensus disorder prediction 65 88 - -
Seca9g02011 325 Pfam WRC 67 109 IPR014977 -
Seca9g02011 325 ProSiteProfiles WRC domain profile. 66 110 IPR014977 -
Seca9g02011 325 MobiDBLite consensus disorder prediction 104 135 - -
Seca9g02011 325 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g02011 Seca-Chr9 32163867 32167505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g02011 8 109 GRF Transcription Factor Family AT3G13960 57.018 6.60e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Seca9g02011 WRC 2.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g02011 - - gmx:100809947 475.322