Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01996 ATGGAGAGTGGTGGCAGAGAAGGCTATGATGGGGTGGTGATGACTATGACCAGAGACCCCAAACCAAGGCTGAGGTGGACAGCTGATCTTCATGATCGGTTTGTGGATGCTGTTACAAAGCTTGGTGGCCCTGATAAGGCGACTCCCAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGTTTGACATTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTAGGAAACAAAATGAAGAGCAGCACAAAGAGAATAATAGATGTTCATATGTAAATTTCAGTAATCGTTCTTCAGGGCCTAATACCAGTTACAGAGATGATAATGAAGGGGGAGAAATCCCAATAGGAGAAGCATTGAGGCATCAGATTGAAGTTCAAAAGAGATTGGAAGAGCAGATCGAGGTGCAGAAGAAATTGCAGATGAGAATAGAGGCTCAAGGGAAGTATTTACAAGCAGTGTTAGAGAAAGCACAGAGGAGCCTTTCCCTAGGTGGGCCAGGCAGTCTTGAAGCATCAAGAGCTCAATTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAATAAAGATGGCAAAGAAAACATAATAGACATGAATGATTTTTATAATAAGTGCCATAGTAGCTCAGCTTTCAATTATCAAGAAGTAGGGAGAGAAGAAAATAAGGATCAAAAGCCTAAGGTTGAAGGGGATTCAGCACAATTTGACTTAAACATCAAAGGTAGCAATGACCTTGGAGCTGAAATGGAATCCAAGATGCTTTCATACAGGGTATACAATTTTTGA 810 0.4086 MESGGREGYDGVVMTMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNEEQHKENNRCSYVNFSNRSSGPNTSYRDDNEGGEIPIGEALRHQIEVQKRLEEQIEVQKKLQMRIEAQGKYLQAVLEKAQRSLSLGGPGSLEASRAQLTEFNSALSNFMENMNKDGKENIIDMNDFYNKCHSSSAFNYQEVGREENKDQKPKVEGDSAQFDLNIKGSNDLGAEMESKMLSYRVYNF. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01996 269 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Seca9g01996 269 Coils Coil 131 151 - -
Seca9g01996 269 MobiDBLite consensus disorder prediction 92 110 - -
Seca9g01996 269 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Seca9g01996 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 12 223 IPR044848 GO:0003700
Seca9g01996 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Seca9g01996 269 Gene3D - 20 78 - -
Seca9g01996 269 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
Seca9g01996 269 MobiDBLite consensus disorder prediction 79 113 - -
Seca9g01996 269 NCBIfam myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Seca9g01996 269 FunFam Myb family transcription factor 20 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01996 Seca-Chr9 31969752 31973927 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01996 12 190 G2-like Transcription Factor Family AT3G24120 52.941 3.44e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g01996 Myb_DNA-binding 2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01996 - - gmx:100810146 452.21