Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01990 ATGGCAGCTTGCACTGTCTACTCAACACAATCTCTCAGAACAAATTGCTCCATCTCAACCCCATCAAAAACACATGTAGGATTTCACCAAAAACAGGTTGTGTTCTACACCACAAGCAAGAGAATAAGCAGCAAGAGAGGCAGTAACAGATATGTGATAACATGTGCAGGAGGTGACTCACAGACAGTGGTGATTGGTCTAGCTGCTGACTCTGGTTGTGGGAAGAGTACCTTCATGAGAAGGCTTACAAGTGTGTTTGGAGGAGCAGCAGAGCCACCAAAAGGTGGAAATCCAGATTCCAACACTCTCATCAGTGACACTACCACAGTCATATGTTTGGATGATTACCATTCATTGGATAGAACTGGTAGAAAGGAAAAGGGTGTCACTGCACTTGACCCAAGAGCCAATGATTTTGATCTCATGTATGAGCAAGTTAAAGCTCTTAAGGATGGAATTGCTGTTGAAAAGCCAATTTACAACCATGTTACTGGTCTCTTGGATCCACCAGAGGTTATTAAACCTCCTAAAATCTTAGTCATTGAAGGTTTGCACCCAATGTTTGATTCTCGGGTAAGAGATCTCTTGGACTTCAGCATCTACCTAGACATTAGCAATGAGGTGAAATTCGCTTGGAAAATTCAGAGAGACATGGCAGAGCGTGGACATAGTCTTGAAAGCATCAAGGCTAGTATTGAAGCAAGGAAGCCTGATTTTGACGCCTATATTGATCCTCAAAAGCAATATGCAGATGCAGTGATAGAAGTGTTGCCAACCCAACTCATTCCTGATGACAATGAGGGGAAGATTCTAAGAGTGAGGTTGATACAGAAAGAGGGGGTTAAGTTCTTTAGCCCAGTTTACTTATTTGATGAGGGTTCTACCATTTCCTGGATACCATGTGGAAGGAAGCTTACATGCTCTTACCCTGGCATCAAATTTTTCTATGGACCAGAGACTTACTTTGGAAATGAGGTACCAACTAGTCTATATTCATAA 999 0.4224 MAACTVYSTQSLRTNCSISTPSKTHVGFHQKQVVFYTTSKRISSKRGSNRYVITCAGGDSQTVVIGLAADSGCGKSTFMRRLTSVFGGAAEPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRANDFDLMYEQVKALKDGIAVEKPIYNHVTGLLDPPEVIKPPKILVIEGLHPMFDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQYADAVIEVLPTQLIPDDNEGKILRVRLIQKEGVKFFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFFYGPETYFGNEVPTSLYS. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01990 332 PRINTS Phosphoribulokinase family signature 69 86 IPR006082 GO:0005524|GO:0005975|GO:0008974
Seca9g01990 332 PRINTS Phosphoribulokinase family signature 231 254 IPR006082 GO:0005524|GO:0005975|GO:0008974
Seca9g01990 332 PRINTS Phosphoribulokinase family signature 213 230 IPR006082 GO:0005524|GO:0005975|GO:0008974
Seca9g01990 332 PRINTS Phosphoribulokinase family signature 178 196 IPR006082 GO:0005524|GO:0005975|GO:0008974
Seca9g01990 332 FunFam Phosphoribulokinase 59 289 - -
Seca9g01990 332 CDD PRK 64 326 - -
Seca9g01990 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 325 IPR027417 -
Seca9g01990 332 Pfam Phosphoribulokinase / Uridine kinase family 64 262 IPR006083 GO:0005524|GO:0016301
Seca9g01990 332 PANTHER URIDINE KINASE 50 272 - -
Seca9g01990 332 ProSitePatterns Phosphoribulokinase signature. 213 226 IPR006082 GO:0005524|GO:0005975|GO:0008974
Seca9g01990 332 Gene3D - 59 297 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01990 Seca-Chr9 31918249 31922181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01990 116 290 PRT Gene Family AT3G27440 26.966 1.27e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01990 K00855 - gmx:100777515 612.453