Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca9g01987 | ATGGGTCGCAAACACGACGCCGTTTTAGTCAGCCAACCAGTCGCCGAAGAAGCGCCTAACAGCCCCGAACTCGAATCGGAGAAGAAGAAGAAAAAGAAGAAGAAGAACAAAGACAAGCTTCAAAACGAAGAAAACAGCCCTAAAAGGAGAAAGTTCGACGAACTCGACCTTCAAAACGACAACGAATCAGAGAAGAAAGACAAGAAGAAGAAAAAGAAGCACAACAAGTTGAAAGAGAACACGGAGGAAACCGACGGCGGCGACAAAGGCGGCGATGAAACGGTGACGGACGGGCCCGTGGTGGTTTCAGGGAAGAATGTAGGAGATGCGAAATACGCGGCGCTGAAAGCCTTCGTGGATTCGGGGCTACCGGAGAACGTGCTGGAATGTTGCAAGGGTTTCGATAGGCCTTCTCCGATTCAATCACGAGCATGGCCTTTCTTGTTGGACGGTCGCGATTTGATTGGAATTGCGGCCACTGGATCAGGGAAGACGCTGGCATTTGGAATACCGGCGGTTATGCATGTTCTCAAAAAGCGGAAGAGTAAAGCTTCCAAGGGTCGGAATCCTCTTTGTCTCGTGCTCTCTCCCACTAGGGAGCTAGCTCAACAAATATCGGATGTGATGTGTGATGCTGGTCAGTCTTGTGGTGTGGAATCAATTTGTTTATATGGTGGAACCTCCAAAGGACCACAAATCTCTTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTCTGTCGCCTGAATGAAGTTTCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTTGGTCAGACATGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTACCAGTTCATCACTTAGCGCAGGAGTTTATGAATCCTCATCCTGTAAAAGTTGTTGTAGGTTCAGAGGATTTAGCTGCTAATCATGATGTCATGCAGATAGTCGAGGTCTTGGATGACCGTGCACGTGATAAGCGTCTGATTGCTTTACTGGAAAAATACCACGAATCTCAGAGGAATCGGGTATTGGTTTTTGTTTTGTACAAATTGGAAGCCACACGTGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAGGTTGTTTCAATACATGGGGACAAAGCACAGCATGATCGCACAAAGGCACTGTCATTATTCAAGAAGGGAAGCTGTCCTTTGATGATTGCTACCGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGCAGTGATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAAAAAGGGGTTGCCCATACATTCTTCACACAGCAGAACAAGGTAGTATTATTCTTTTCTATGTGTATAATGGGTTCTTATTTTGCTCGGCTATCCTTTTTTCTATTATATAATTGGCGTTTCTCATCTTTTTCCCCTTGTACTAACCAATGGAAATATTTCAGGGACTTGCTGGGGAGCTCGTGA | 1563 | 0.453 | MGRKHDAVLVSQPVAEEAPNSPELESEKKKKKKKKNKDKLQNEENSPKRRKFDELDLQNDNESEKKDKKKKKKHNKLKENTEETDGGDKGGDETVTDGPVVVSGKNVGDAKYAALKAFVDSGLPENVLECCKGFDRPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLKKRKSKASKGRNPLCLVLSPTRELAQQISDVMCDAGQSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCRLNEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMNPHPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLIALLEKYHESQRNRVLVFVLYKLEATRVEKMLQQGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEAVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKVVLFFSMCIMGSYFARLSFFLLYNWRFSSFSPCTNQWKYFRDLLGSS. | 521 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca9g01987 | 520 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 189 | 475 | IPR027417 | - | |
Seca9g01987 | 520 | Pfam | Helicase conserved C-terminal domain | 350 | 459 | IPR001650 | - | |
Seca9g01987 | 520 | CDD | SF2_C_DEAD | 336 | 468 | - | - | |
Seca9g01987 | 520 | Gene3D | - | 325 | 482 | IPR027417 | - | |
Seca9g01987 | 520 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 351 | 511 | IPR001650 | - | |
Seca9g01987 | 520 | Pfam | DEAD/DEAH box helicase | 139 | 306 | IPR011545 | GO:0003676|GO:0005524 | |
Seca9g01987 | 520 | Coils | Coil | 52 | 72 | - | - | |
Seca9g01987 | 520 | Gene3D | - | 56 | 324 | IPR027417 | - | |
Seca9g01987 | 520 | MobiDBLite | consensus disorder prediction | 1 | 97 | - | - | |
Seca9g01987 | 520 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 145 | 322 | IPR014001 | - | |
Seca9g01987 | 520 | SMART | helicmild6 | 378 | 459 | IPR001650 | - | |
Seca9g01987 | 520 | MobiDBLite | consensus disorder prediction | 37 | 67 | - | - | |
Seca9g01987 | 520 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 268 | 276 | IPR000629 | - | |
Seca9g01987 | 520 | MobiDBLite | consensus disorder prediction | 76 | 92 | - | - | |
Seca9g01987 | 520 | CDD | DEADc | 132 | 323 | - | - | |
Seca9g01987 | 520 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 62 | 471 | - | - | |
Seca9g01987 | 520 | SMART | ultradead3 | 133 | 339 | IPR014001 | - | |
Seca9g01987 | 520 | FunFam | ATP-dependent RNA helicase RhlB | 325 | 482 | - | - | |
Seca9g01987 | 520 | Coils | Coil | 23 | 46 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca9g01987 | Seca-Chr9 | 31885123 | 31890775 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca9g01987 | 115 | 467 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.239 | 3.27e-55 | 189 |