Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01987 ATGGGTCGCAAACACGACGCCGTTTTAGTCAGCCAACCAGTCGCCGAAGAAGCGCCTAACAGCCCCGAACTCGAATCGGAGAAGAAGAAGAAAAAGAAGAAGAAGAACAAAGACAAGCTTCAAAACGAAGAAAACAGCCCTAAAAGGAGAAAGTTCGACGAACTCGACCTTCAAAACGACAACGAATCAGAGAAGAAAGACAAGAAGAAGAAAAAGAAGCACAACAAGTTGAAAGAGAACACGGAGGAAACCGACGGCGGCGACAAAGGCGGCGATGAAACGGTGACGGACGGGCCCGTGGTGGTTTCAGGGAAGAATGTAGGAGATGCGAAATACGCGGCGCTGAAAGCCTTCGTGGATTCGGGGCTACCGGAGAACGTGCTGGAATGTTGCAAGGGTTTCGATAGGCCTTCTCCGATTCAATCACGAGCATGGCCTTTCTTGTTGGACGGTCGCGATTTGATTGGAATTGCGGCCACTGGATCAGGGAAGACGCTGGCATTTGGAATACCGGCGGTTATGCATGTTCTCAAAAAGCGGAAGAGTAAAGCTTCCAAGGGTCGGAATCCTCTTTGTCTCGTGCTCTCTCCCACTAGGGAGCTAGCTCAACAAATATCGGATGTGATGTGTGATGCTGGTCAGTCTTGTGGTGTGGAATCAATTTGTTTATATGGTGGAACCTCCAAAGGACCACAAATCTCTTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTCTGTCGCCTGAATGAAGTTTCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTTCGCTCTATACTTGGTCAGACATGTTCTGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCTTTACCAGTTCATCACTTAGCGCAGGAGTTTATGAATCCTCATCCTGTAAAAGTTGTTGTAGGTTCAGAGGATTTAGCTGCTAATCATGATGTCATGCAGATAGTCGAGGTCTTGGATGACCGTGCACGTGATAAGCGTCTGATTGCTTTACTGGAAAAATACCACGAATCTCAGAGGAATCGGGTATTGGTTTTTGTTTTGTACAAATTGGAAGCCACACGTGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAGGTTGTTTCAATACATGGGGACAAAGCACAGCATGATCGCACAAAGGCACTGTCATTATTCAAGAAGGGAAGCTGTCCTTTGATGATTGCTACCGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGCAGTGATCAACTATAGTTTTCCTCTAACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAAAAAGGGGTTGCCCATACATTCTTCACACAGCAGAACAAGGTAGTATTATTCTTTTCTATGTGTATAATGGGTTCTTATTTTGCTCGGCTATCCTTTTTTCTATTATATAATTGGCGTTTCTCATCTTTTTCCCCTTGTACTAACCAATGGAAATATTTCAGGGACTTGCTGGGGAGCTCGTGA 1563 0.453 MGRKHDAVLVSQPVAEEAPNSPELESEKKKKKKKKNKDKLQNEENSPKRRKFDELDLQNDNESEKKDKKKKKKHNKLKENTEETDGGDKGGDETVTDGPVVVSGKNVGDAKYAALKAFVDSGLPENVLECCKGFDRPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGIPAVMHVLKKRKSKASKGRNPLCLVLSPTRELAQQISDVMCDAGQSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCRLNEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLPVHHLAQEFMNPHPVKVVVGSEDLAANHDVMQIVEVLDDRARDKRLIALLEKYHESQRNRVLVFVLYKLEATRVEKMLQQGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEAVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKVVLFFSMCIMGSYFARLSFFLLYNWRFSSFSPCTNQWKYFRDLLGSS. 521
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01987 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 475 IPR027417 -
Seca9g01987 520 Pfam Helicase conserved C-terminal domain 350 459 IPR001650 -
Seca9g01987 520 CDD SF2_C_DEAD 336 468 - -
Seca9g01987 520 Gene3D - 325 482 IPR027417 -
Seca9g01987 520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 511 IPR001650 -
Seca9g01987 520 Pfam DEAD/DEAH box helicase 139 306 IPR011545 GO:0003676|GO:0005524
Seca9g01987 520 Coils Coil 52 72 - -
Seca9g01987 520 Gene3D - 56 324 IPR027417 -
Seca9g01987 520 MobiDBLite consensus disorder prediction 1 97 - -
Seca9g01987 520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 322 IPR014001 -
Seca9g01987 520 SMART helicmild6 378 459 IPR001650 -
Seca9g01987 520 MobiDBLite consensus disorder prediction 37 67 - -
Seca9g01987 520 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 268 276 IPR000629 -
Seca9g01987 520 MobiDBLite consensus disorder prediction 76 92 - -
Seca9g01987 520 CDD DEADc 132 323 - -
Seca9g01987 520 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 62 471 - -
Seca9g01987 520 SMART ultradead3 133 339 IPR014001 -
Seca9g01987 520 FunFam ATP-dependent RNA helicase RhlB 325 482 - -
Seca9g01987 520 Coils Coil 23 46 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca9g01987 Seca-Chr9 31885123 31890775 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01987 115 467 Eukaryotic Initiation Factors Gene Family AT3G19760 33.239 3.27e-55 189