Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01986 ATGGCAGATAGTCCAGTATCGTTTTTATTGGACAAACTGACTTCTTTACTTCAAGAAGAAGTGAATCTGCTAAGAGGGGTCCGTGAAAATGTTCAGTACATCAAAGATGAACTGGAGCGCCACAAGGCCATCTTGATGGAGGCTGATGTACTTGAAGACAAAGACCCTGAACTCAAAGTATGGGTTAAACGAGTGAGAGATATTGCTCATGACATGGAAGATGCTATAGATGAATACAATCTTCGCCTTGTTGACCAACATGGACGAAGCAACATTTTTTCTCTTCATAAGTTTGCTTTTGGCTTTAAGACCATGAAAGCTAGGCATCGGATTGCTTCACATATACAAGATATCAAATCCAAAGTGGAAGTGATCTCTCAGGGACGTCCCAGCACATCTGTCATAGGACCAAGCTCGACTCAAAGGTTGTCATCAAGGCTTGATAGCCAAGATGATGCCCTTTTGCTGGAGGAAGCTGATCTAGTGGGAATTGACAAACCCAAAAAGCAGCTGACGGATTTGCTTTTCAATGATGAACCAGGTCGGGCTGTGATTCCCATTTATGGAATGGGAGGGCTGGGGAAAACTACTTTGGCGAAACAAGTCTATGATGATCCAAAAGTGAAGAAGCGTTTCAGGATTCATGCTTGGGTTAATGCTTCTCAATCTTTCAAGATAAAAGAGCTGCTGAAGGACCTGGTTCAACAGCTCCATAATGTCATTGGAAAACCAGCTCCAGAAGCAGTTGGACAAATGAAAAGTGACAAGCTGAAAGAGGTGATCAAGAATTTGCTTCAACGAAGCAGGTACCTCATTGTGCTGGATGATGTATGGCATGTAAATGTCTGGGATGCTGTCAAACTTGCTTTGCCTAATAACAACCGTGGCAGTAGAGTGATGCTTACCACACGAAAGAAAGATATAGCCTTGTATTCCTGTGCTGAATTGGGTAAGGACTTTAACCCTGAATTCTTACCTGAGCAAGAAGCTTGGCCTCTTTTCTGTAGGAAGACATTTCAGGGTAACTCATGCCCTCCTCATCTGGAAGAAGTTTGCCGTAGTATCTTAAAGATGTGTGGGGGGTTGCCACTAGCAATTGTGGCAATCAGTGGTGCTTTGGCTACGAGAGGCAGGTCAAACATAGAAGAGTGGCAGATAGTTTGCAGATGTTTTGGGGCTGAAATTGAAGGCAATGACAAGCTGGAAGATATGAAGAAAGTGCTTTCCCTAAGTTTCAATGAGTTACCTTACTATCTCAAATCCTGTCTGTTGTACCTGAGCATCTTCCCAGAATTTCATGCTATTGAGCACATGAGACTGATTCGCTTGTGGATAGCCGAAGGGTTTGTCAATGGAGAAGATGGAAAGACACTGGAGGAAGTTGCAGACAGTTACCTCAAGGAGCTCTTGAACAGAAGTCTGCTTCAAGTGGTAGAAAAAACCAGTGATGGCAGAATGAAGACTTGTCGCATGCATGACCTTCTAAGGGAGATTGTCAATTTGAAGTCAAAGGATCAGAACTTTGCAACAATAGCCAAAGAACAAGACATGATCTAG 1557 0.4316 MADSPVSFLLDKLTSLLQEEVNLLRGVRENVQYIKDELERHKAILMEADVLEDKDPELKVWVKRVRDIAHDMEDAIDEYNLRLVDQHGRSNIFSLHKFAFGFKTMKARHRIASHIQDIKSKVEVISQGRPSTSVIGPSSTQRLSSRLDSQDDALLLEEADLVGIDKPKKQLTDLLFNDEPGRAVIPIYGMGGLGKTTLAKQVYDDPKVKKRFRIHAWVNASQSFKIKELLKDLVQQLHNVIGKPAPEAVGQMKSDKLKEVIKNLLQRSRYLIVLDDVWHVNVWDAVKLALPNNNRGSRVMLTTRKKDIALYSCAELGKDFNPEFLPEQEAWPLFCRKTFQGNSCPPHLEEVCRSILKMCGGLPLAIVAISGALATRGRSNIEEWQIVCRCFGAEIEGNDKLEDMKKVLSLSFNELPYYLKSCLLYLSIFPEFHAIEHMRLIRLWIAEGFVNGEDGKTLEEVADSYLKELLNRSLLQVVEKTSDGRMKTCRMHDLLREIVNLKSKDQNFATIAKEQDMI. 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01986 518 CDD RX-CC_like 2 126 IPR038005 -
Seca9g01986 518 Gene3D - 324 411 IPR042197 -
Seca9g01986 518 FunFam Probable disease resistance protein At1g61300 148 316 - -
Seca9g01986 518 Gene3D - 147 314 IPR027417 -
Seca9g01986 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 426 IPR027417 -
Seca9g01986 518 Pfam Rx N-terminal domain 6 90 IPR041118 -
Seca9g01986 518 Pfam NB-ARC domain 166 413 IPR002182 GO:0043531
Seca9g01986 518 Gene3D - 5 112 - -
Seca9g01986 518 PRINTS Disease resistance protein signature 264 278 - -
Seca9g01986 518 PRINTS Disease resistance protein signature 184 199 - -
Seca9g01986 518 PRINTS Disease resistance protein signature 359 373 - -
Seca9g01986 518 PANTHER DISEASE RESISTANCE PROTEIN RP 32 508 IPR044974 GO:0006952
Seca9g01986 518 Gene3D - 412 502 IPR036388 -
Seca9g01986 518 FunFam Probable disease resistance protein At1g63360 412 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01986 Seca-Chr9 31872827 31874383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01986 185 366 WRKY Transcription Factor Family AT5G45050 25.137 4.30e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01986 K13457 - gmx:100305458 853.588