Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01977 ATGCAAACCACTTCAGGGTATGAGGATGTATACAGTGAACTAGGAATTCCAACAATGATTACTTGGAGTTATGATGGTGAAGAAGTAGTTGTGGAGGGATCGTGGGATAATTGGAAAACAAGAATGCCATTGCACAGATCAGGAAAGGATTTCACAATAAAGAAGGTACTTTCATCTGGTGTTTACCAGTTTAGATTTATTGTGGATGGACAATGGAGGTACGGTTTTGACTTGCCTTGGGCCCAAGATGATACTGAGAATGCTTACAACATTTTGGACGTGCAGGTACTATTTTGTTGGACATATTTAGTATGCAACCCATGTGATCAAAATTGA 336 0.3929 MQTTSGYEDVYSELGIPTMITWSYDGEEVVVEGSWDNWKTRMPLHRSGKDFTIKKVLSSGVYQFRFIVDGQWRYGFDLPWAQDDTENAYNILDVQVLFCWTYLVCNPCDQN. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01977 111 CDD E_set_AMPKbeta_like_N 17 94 - -
Seca9g01977 111 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 2 96 IPR043554 -
Seca9g01977 111 Pfam Glycogen recognition site of AMP-activated protein kinase 16 95 IPR032640 -
Seca9g01977 111 SUPERFAMILY E set domains 16 95 IPR014756 -
Seca9g01977 111 Gene3D Immunoglobulins 11 97 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01977 Seca-Chr9 31770560 31770995 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01977 24 94 Protein tyrosine phosphatase (PTP) family AT3G01510 34.247 2.15e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01977 K07199 - gmx:100777497 177.563