Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01972 ATGGGTTACGAAGACGATCCGTATCGGGACGAGGATGGAGAACCGTTGATGGACTTCGATGATATTCAATCCGATCGGGAGCCATCTCCGGAGCCGCAACAGCTTGACGATTTAGAGGAAGACGTTGACGATTGGCGCGGCCGGGAACGGTCACAGACTCCGGTGTACGACAACGATCCGTCGAGGTCGAAGCCCAGGAAGAGGCTCATCAAGAAGAGCGACACCGGAAAGCAGTCTGTGGCGCCGGAGCTCGACGATGAGGTGGAAGAGGACAATATTCCGGGGAGGTTCGATGATGGGGATGGGAGGAAGAGGAAGAAGGGGAAGGATGGTGGCTCCGGGAAGAAGGAGAAGAGACTTAAGGGGGAGAAGAGGTTTGGAAGTAGCGGAGGTAAAGGAGGGTCCAAGTTTGGAGCTTCCAAGAAAGGGTTTGGTGGGAAGGCAGGGAAGGATCACGATGGTGAAGTGAAGGAGATGTGGGATACAATTGCTGGAGGGGATTCTGAGGATGATCGTGATGGGGTAAGAAATGTGGATGATGACAACTTTATAGATGACAGTGGAGTGGAACATGCTTATTATGCTAGTGACAATGAACCACGTTCTCCTGGTGATGCTCCCCAGGCAGAGGAAGGTGAAGAGGATGAAGAAATCAAGGATCTTTTCAAGATAGGTAAGAAAAAGAAGAAGAATGAAAGAAGTCCTGCAGAAATAGCTTTATTAGTTGAGAATGTGATGGCTGAGCTTGAGGTTACTGCTGAAGAGGATGCTGAACTTAATAGACAGGGGAAGCCTGCTATTAATAAACTCAAGAAGTTGCCACTTCTTCAAGAAGTCCTCTCAAAGAAACAGCTTCAACTAGAGTTTTTAGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGCTTGCCAAATATAAACATACGCACTGCAATTTTGAAGATTTTGAATGATTTTCCTATAGATCTAGAGCAGTATGATAGAAGAGAACAGCTGAAGAAGAGTGGCCTTGGAAAGGTAATTATGTTTTTATCAAAGTCTGATGAAGAAATCAATGTAAATAGGAAACTAGCCAAAGATCTGGTTGATAAATGGAGCCGGCCTATATTTAACAAGAGTACACGGTTTGAAGACATGAGAAGTGTTGAGGATGATAGGGTTCCTTTCAGGAGGCCATCAGTCAAAAAGTACTCTTGCACTGTTTCTTTTTTTAATGGCTTGGCTCCTGCAGTATTAGATTTACTTTTTGCAATGTGTTGA 1281 0.4528 MGYEDDPYRDEDGEPLMDFDDIQSDREPSPEPQQLDDLEEDVDDWRGRERSQTPVYDNDPSRSKPRKRLIKKSDTGKQSVAPELDDEVEEDNIPGRFDDGDGRKRKKGKDGGSGKKEKRLKGEKRFGSSGGKGGSKFGASKKGFGGKAGKDHDGEVKEMWDTIAGGDSEDDRDGVRNVDDDNFIDDSGVEHAYYASDNEPRSPGDAPQAEEGEEDEEIKDLFKIGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLPLLQEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQYDRREQLKKSGLGKVIMFLSKSDEEINVNRKLAKDLVDKWSRPIFNKSTRFEDMRSVEDDRVPFRRPSVKKYSCTVSFFNGLAPAVLDLLFAMC. 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01972 426 MobiDBLite consensus disorder prediction 19 33 - -
Seca9g01972 426 MobiDBLite consensus disorder prediction 95 126 - -
Seca9g01972 426 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 291 379 IPR035441 -
Seca9g01972 426 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 235 382 IPR035441 -
Seca9g01972 426 ProSiteProfiles TFIIS N-terminal domain profile. 296 379 IPR017923 -
Seca9g01972 426 Coils Coil 242 262 - -
Seca9g01972 426 MobiDBLite consensus disorder prediction 41 64 - -
Seca9g01972 426 MobiDBLite consensus disorder prediction 1 18 - -
Seca9g01972 426 MobiDBLite consensus disorder prediction 1 217 - -
Seca9g01972 426 MobiDBLite consensus disorder prediction 145 187 - -
Seca9g01972 426 Pfam TFIIS helical bundle-like domain 321 376 IPR017923 -
Seca9g01972 426 PANTHER PROTEIN IWS1 HOMOLOG 1 1 404 IPR044204 GO:0009742|GO:0032784
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01972 Seca-Chr9 31678644 31682839 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca9g01972 Med26 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01972 K17498 - gmx:100801805 605.52