Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01956 ATGTTAGCTGCCATTTGCAATCACATACTGGCAATTTATGCTGATAGGAAATCTTGGTTTTACAGCGGTGAGAGTGCAAGTGAAGGCACTAGTGAAGGAAGTGATGCCAATTCTCAGAATGACTCTCAATTGAAATCAGGGGGCAGGCGGGATTCTTTCGAAGATGAACCATCTCAAAATGGCAGTTCGGCGCATACTTCTCAAAATGGGGGACTTAATACACCTCATGCAGTGGTTAACCAAACGATGTCTATCATGCCTATCACTGCAGGTGGTGCTCCTGGAGCTGTTCCGGGCCCCACAACAAACTTAAATATAGGAATGGATTATTGGGGCACACCAACTTCATCCAGCATTCCTGCACTGCGTGGAAAGGTTCCGTCTACTACAGTTGCAGGAGGGATGGTTACTGGTGGATCACGGGATACTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAACTTAAAAGACAAAGGCGGAAGCAGTCTAACAGGGAATCTGCTCGCAGATCGAGGTTACGCAAGCAGGCCGAGTGTGATGAGCTAGCACAGCGTGCTGAAGCTTTGAAAGAAGAAAACGCTTCCCTCCGATCAGAAGTAAGTCGTATCAGGAGTGAGTATGAGCAGCTACTTTCAGAGAATTCAGCTCTCAAGGAGAGGCTTGGGGAACTACCTGATCAACATGTTGTGCATAATGACACTCAACAGAGTGGGCAGACAGAGACTGCAGGGTGGTCATTAGGATCACATTGCTAA 759 0.4717 MLAAICNHILAIYADRKSWFYSGESASEGTSEGSDANSQNDSQLKSGGRRDSFEDEPSQNGSSAHTSQNGGLNTPHAVVNQTMSIMPITAGGAPGAVPGPTTNLNIGMDYWGTPTSSSIPALRGKVPSTTVAGGMVTGGSRDTVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSEYEQLLSENSALKERLGELPDQHVVHNDTQQSGQTETAGWSLGSHC. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01956 252 Gene3D - 156 210 - -
Seca9g01956 252 Pfam Disordered region downstream of MFMR 22 120 - -
Seca9g01956 252 SMART brlzneu 153 217 IPR004827 GO:0003700|GO:0006355
Seca9g01956 252 MobiDBLite consensus disorder prediction 23 75 - -
Seca9g01956 252 MobiDBLite consensus disorder prediction 57 75 - -
Seca9g01956 252 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 155 218 IPR004827 GO:0003700|GO:0006355
Seca9g01956 252 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 240 IPR044827 GO:0003700|GO:0006355|GO:0043565
Seca9g01956 252 MobiDBLite consensus disorder prediction 155 175 - -
Seca9g01956 252 MobiDBLite consensus disorder prediction 230 252 - -
Seca9g01956 252 MobiDBLite consensus disorder prediction 227 252 - -
Seca9g01956 252 Coils Coil 173 221 - -
Seca9g01956 252 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 160 175 IPR004827 GO:0003700|GO:0006355
Seca9g01956 252 SUPERFAMILY Leucine zipper domain 156 212 IPR046347 GO:0003700|GO:0006355
Seca9g01956 252 MobiDBLite consensus disorder prediction 23 46 - -
Seca9g01956 252 Pfam bZIP transcription factor 153 215 IPR004827 GO:0003700|GO:0006355
Seca9g01956 252 CDD bZIP_plant_GBF1 158 208 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01956 Seca-Chr9 31521999 31525958 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01956 18 242 bZIP Transcription Factor Family AT2G35530 57.082 1.35e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca9g01956 MFMR_assoc 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01956 K09060 - gmx:100101882 370.548