Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01945 ATGTTGAGAGGGAAGGAAGAGATGGAGAGTGGTTCTGGTAGTGAGCAAGTTGAAGACAAGTCAGGGAATGAGCAAGAAAGTGAGCAGCCTAAGAAGAAACGTTATCACAGGCACACTGCTCGCCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCTCATCCGGATGATAAGCAGAGGCTAAAACTAAGCCATGATCTAGGCCTGAAGCCTCGGCAGGTTAAGTTCTGGTTCCAGAATCGCCGAACACAGATGAAGGCACAACAAGACCGGGCAGATAACGTGATACTTAGAGCAGAAAATGAGAATCTCAAGAATGAGAACTATCGGTTACAAGCAGCGTTACGTAGTATTATCTGCCCCAATTGTGGTGGTCCATGCATAATGGGCGCTGAGTTGGGCTTGGATGAACAACAACTTCGACTTGAAAATGCCCGCTTAAGAGAAGAGTTAGAACGTGTGTGTTGTATCACTTCAAGATATACTGGGCGTCCAATCCAAACAATGGGAGCAGCTCCTGCTCTTATGGCTCCTTCATTGGATTTGGACATGAACATATACCAAAGACATTTTGCGGATTCAATTGCTCCTTGCACAGAAATGATTCCTGTGCCCATGTTGCCTCCTTCTGAAGCTTCACCGTTTCCAGAGAGTGGTATCTTAATGGAAGATGACAAGTCTATGGCCTTGGAGCTTGCAGCATCTTCCATGGCTGAACTTGTGAAGATGTGTCAGACAAACGAGCCACTTTGGATACGAAGTAGTGAGAATGAAAGGGAAGTGCTTAATTATGAAGAGCATGCGCGGCTGTTTCCATGTCCTTTGAATCTCAAACACCGAAGTGAACTCAGAACAGAAGCTAGCCGTGACACTGTTGTGGTTATAATGAATAGTGTCACTCTTGTTGATGCTTTCCTTGATGCTCAAAAATGGATGGAATTGTTTCCTACAATCGTTTCAAGAGCAAAAACTCTCCAAATAATTTCTTCTGGTGCTTCTGGTCATGCAAGTGGGACTCTTCAGCTGATGTATGCAGAATTCCAAGTTATTTCTCCTTTGGTGTCTACTCGTGAGACTCATTTTCTTCGGTATTGTCAACAAAATGCTGAGGAGGGAACCTGGGCCATTGTTGATTTTCCTATTGACAGCTTGCACCAAAATTTTCACCCTTCTTATCCCAGATACTGCAGGAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGGTATTCAAGGGTAACATGGGTTGAACATGCAAAAGTAGAAGAGAAACCTGTTCATCAGATACTCTGTAACTATGTGTACAGTGGAATGGCATTTGGAGCACAGCGCTGGTTAGGAGTTTTGCAGAGACAATGTGAGAGGGTCGCCAGCCTCATGGCCAGAAACATATCAGATCTTGGAGTAATTGCAGTGATACCTTCACCAGAAGCACGAAAGAACTTGATGAAACTATCCCAAAGAATGATAAAAACTTTTAGCCTCAACATGAGCACCTCCGGTGGTCAATCATGGACTGCCATATCAGATTCCCCTGAAGACACTGTTAGAATCACAACTAGGAAAATCACAGAGCCTGGCCAACCAAGTGGGGTTATTCTCGGTGCAGTTTCAACCACTTGGCTGCCCTATTCTCATACCAAAGTCTTTGATCTCCTCAGGGATGAACGTCACAGATCTCAGATGGATGCTCTTTCCAATGGAAACTCATTAAATGAAGTCGCTCACATTGCAAATGGTTCACATCCAGGAAACTGCATTTCCCTTCTTCGCGTAGCAAGTAACTCATCCCAGAATGTGGAGCTAATGCTACAAGAGAGTTGCACAGATCAATCTGGAAGCTTAGTAGTATACACCAACATCGATGTGGAATCCATCCAGCTAGCCATGAGTGGAGAGGACCCTTCTTGCATTTCCCTTCTTCCTCAAGGATTCATGATAGTTCCAATGGCATCATCCAACAATGGTGACACACAATGCCTTGCCATGGATGGCAATTCATCTGAAGCTGCCAATGGATCAGCATCTACTACTAGTGGTGCCAGCAATTCAGGTTGCCTTCTCATCATGGGGATGCAAGTTCTGGCAAGCACAATCCCTTCTGCAAAGATCAACCTTTCAAGCGTGACAGCAATCAATAACCACCTCTGCAACACTCTGCACCAAATTGAAGCTTCTCTTTGTAGCACTAACAGCTGCCTCGTTGGTTCTTGTTCTGAACCCACCGCTAGTGCACCCCCAAAGCAGTGA 2256 0.4499 MLRGKEEMESGSGSEQVEDKSGNEQESEQPKKKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRADNVILRAENENLKNENYRLQAALRSIICPNCGGPCIMGAELGLDEQQLRLENARLREELERVCCITSRYTGRPIQTMGAAPALMAPSLDLDMNIYQRHFADSIAPCTEMIPVPMLPPSEASPFPESGILMEDDKSMALELAASSMAELVKMCQTNEPLWIRSSENEREVLNYEEHARLFPCPLNLKHRSELRTEASRDTVVVIMNSVTLVDAFLDAQKWMELFPTIVSRAKTLQIISSGASGHASGTLQLMYAEFQVISPLVSTRETHFLRYCQQNAEEGTWAIVDFPIDSLHQNFHPSYPRYCRRSSGCVIQDMPNGYSRVTWVEHAKVEEKPVHQILCNYVYSGMAFGAQRWLGVLQRQCERVASLMARNISDLGVIAVIPSPEARKNLMKLSQRMIKTFSLNMSTSGGQSWTAISDSPEDTVRITTRKITEPGQPSGVILGAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRVASNSSQNVELMLQESCTDQSGSLVVYTNIDVESIQLAMSGEDPSCISLLPQGFMIVPMASSNNGDTQCLAMDGNSSEAANGSASTTSGASNSGCLLIMGMQVLASTIPSAKINLSSVTAINNHLCNTLHQIEASLCSTNSCLVGSCSEPTASAPPKQ. 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01945 751 SUPERFAMILY Bet v1-like 478 726 - -
Seca9g01945 751 Gene3D - 17 100 - -
Seca9g01945 751 Coils Coil 88 115 - -
Seca9g01945 751 CDD START_ArGLABRA2_like 227 456 - -
Seca9g01945 751 ProSiteProfiles START domain profile. 223 460 IPR002913 GO:0008289
Seca9g01945 751 CDD homeodomain 32 90 IPR001356 GO:0003677
Seca9g01945 751 SMART START_1 232 457 IPR002913 GO:0008289
Seca9g01945 751 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Seca9g01945 751 MobiDBLite consensus disorder prediction 1 39 - -
Seca9g01945 751 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 29 729 IPR042160 -
Seca9g01945 751 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Seca9g01945 751 MobiDBLite consensus disorder prediction 1 33 - -
Seca9g01945 751 SMART HOX_1 30 93 IPR001356 GO:0003677
Seca9g01945 751 SUPERFAMILY Homeodomain-like 21 90 IPR009057 -
Seca9g01945 751 SUPERFAMILY Bet v1-like 225 459 - -
Seca9g01945 751 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Seca9g01945 751 Gene3D - 232 443 IPR023393 -
Seca9g01945 751 Pfam START domain 233 457 IPR002913 GO:0008289
Seca9g01945 751 FunFam Homeobox-leucine zipper protein HDG1 17 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01945 Seca-Chr9 31368119 31373420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01945 15 742 Homeobox Transcription Factor Family AT5G46880 57.627 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca9g01945 START 4e-41 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01945 - - gmx:100812829 1245.72