Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01944 ATGGTGGAAAAAAGAGTGTGTTTATCTAAGGAGGTTAGAAATGGGTTAGAAATTTTGAAGCGTAAAAGGCTTGAGCGCGCCAAATCTATCACTGCCACCCAGACAAGCATTGCTAACATGATGAACAGAAGTGGAGGAGATGCGTTAAGAGCCTCAGGATCATGTGGCATGGGATTGCATGGTAATGCAGATGCCTTTTCCAAGCGGAAAGTGGATAAGTTTGACACCAGTGATCTGGATTGGGCTGATAAAATTCCAGAGTGTCCTGTGTATTCTCCAACAAAGGAGGAATTTGAGGACCCTTTGATTTACTTGCAAAAGATAGCCCCAGAAGCATCTAAATATGGTATATGCAAGATTATTTCGCCTTTGAGTGCTTCTGTTCCTGCTGGGATTGTTTTAATGAAGGAGAAACCGGGATTCAAATTTACAACTAGAGTGCAGCCCCTTCGCCTAGCTGAATGGGATACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTTCGTGATTTTGAGAAAATCGCGAACAAAGCTTTTGCACGAAGATATTGCAGTGCCGGATGTCTTCCTGCAACATACTTGGAAAAAGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGAAACTGTTGAATATGCATGTGATGTTGATGGCAGTGCCTTTTCATCTTCTCCCACTGATGAGCTTGGGAACAGCAAATGGAATTTGAAGAAACTTTCACGATTGCACAAATCAGTTTTGCGGCTCTTGGAAACGTCAATTCCGGGAGTAACAGAACCCATGCTGTACATTGGAATGCTGTTTAGCATGTTTGCTTGGCATGTGGAGGATCATTATCTGTACAGCATTAATTATCATCACTGTGGGGCATCAAAAACATGGTACGGTATCCCAGGTCATGCAGCTTTGGAATTTGAAAGGGTGGTGAGAGAACATGTTTATACTAATGATATTTTGTCAAGTGATGGGGAAGATGGAGCCTTTGATGTTCTCCTGGGGAAAACAACACTGTTTCCACCAAATATTTTGTTGGAGCATAAGGTCCCTGTCTACAAAGCAGTTCAGAAGCCAGGGGAGTTTGTAATAACCTTCCCTAGAGCATATCATGCTGGCTTTAGTCATGGTTTCAACTGTGGAGAAGCAGTGAATTTTGCAATGGGTGATTGGTTTCCTCTAGGTGCTATTGCTAGCCGGAGATATGCACTTCTTAACAGGGTTCCTTTGCTGCCCCATGAGGAACTTCTTTGCAAAGAAGCAATGCTTCTTCATACATGCTTGGAACTTGAAGATTCAGACTTTCCCTCTTTAGACTCATTTTCTCATAAGAGTATTAAGATTTCTTTTGTTAATTTGATGCGTTTCCAGCATTGTGCTCGTTGGTTCCTAATGAAATCAAGGGCATGTATAAGTGTGGCTTCTCATTCGCATGGCACAATTCTCTGTAGCCTTTGCAAACGTGACTGCTATATAGCTTATGTTGACTGCAACTGTCACATGCACCCTGTGTGCCTACGTCATGATGTTGAATCTGTTGACTTCATGTGTGGGAGCAAACACACACTTTATGTGAGGGAGGATATTACGGATATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAAGATGGGATACTGAATGAGATAAACAAGCAAACTGAAAGTGACCAAAATATGTATTCATACCCATTGTCAAAAATGTTTCAGAGAGCTGAAGCAAATGGATACTCACTTTATTGTGAGCTAAAACTTGATTCTGTTATAGAATTTTATACAACTCCAGAACAGGCAGCAAATAATCAAGAGTGTGGTACACAAAATCAATTTGTTTTCAGACATTTCTCTGAAAATCATAAACCAGAAGTGTCTGAGATTTCCTTTTCTTCTGCTGCATCCACTCTTTGTTCTGTTTCAGAGCCTCTTGACAGCTTCTCTGCTCCCAAGAATGTATGTCCTATGAATATTGTCATTGCATATAATTGCATTGAGATTTGA 2001 0.4083 MVEKRVCLSKEVRNGLEILKRKRLERAKSITATQTSIANMMNRSGGDALRASGSCGMGLHGNADAFSKRKVDKFDTSDLDWADKIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIISPLSASVPAGIVLMKEKPGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDFEKIANKAFARRYCSAGCLPATYLEKEFWHEIGCGKMETVEYACDVDGSAFSSSPTDELGNSKWNLKKLSRLHKSVLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGHAALEFERVVREHVYTNDILSSDGEDGAFDVLLGKTTLFPPNILLEHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLLHTCLELEDSDFPSLDSFSHKSIKISFVNLMRFQHCARWFLMKSRACISVASHSHGTILCSLCKRDCYIAYVDCNCHMHPVCLRHDVESVDFMCGSKHTLYVREDITDMEAAAKMFEQEDGILNEINKQTESDQNMYSYPLSKMFQRAEANGYSLYCELKLDSVIEFYTTPEQAANNQECGTQNQFVFRHFSENHKPEVSEISFSSAASTLCSVSEPLDSFSAPKNVCPMNIVIAYNCIEI. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01944 666 ProSiteProfiles JmjN domain profile. 88 129 IPR003349 -
Seca9g01944 666 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Seca9g01944 666 SUPERFAMILY Clavaminate synthase-like 166 421 - -
Seca9g01944 666 SMART JmjN_1 87 128 IPR003349 -
Seca9g01944 666 SMART cupin_9 232 405 IPR003347 -
Seca9g01944 666 Gene3D Cupin 88 440 - -
Seca9g01944 666 ProSiteProfiles JmjC domain profile. 232 405 IPR003347 -
Seca9g01944 666 Pfam JmjC domain, hydroxylase 265 388 IPR003347 -
Seca9g01944 666 Pfam jmjN domain 89 121 IPR003349 -
Seca9g01944 666 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 559 - -
Seca9g01944 666 FunFam Lysine-specific demethylase isoform A 83 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01944 Seca-Chr9 31343673 31350285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01944 85 548 JUMONJI Transcription Factor Family AT2G34880 32.965 1.78e-64 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca9g01944 JmjC 4.6e-40 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01944 - - gmx:100798611 1209.51