Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01943 ATGGAGCTGTTCCCAGCACAACCAGACTTGTCCTTGCAAATCAGTCCTCCAAACACCAAACCCACATCAAGTTGGAGGAGAACCACAGAAGAAGACATGGATTTGGGGTTTTGGAAGAGAGCTTTAGAGTCCAGAAACTCCATATCATCAATGGCTAAAACAGATACAACCTCTTTTGACCTTTCACTCTCAAATCCAAGACCTTCTTCAGAATCCAACAACACTTCAAACCTCATTCATCACTTCCAAAATGGGAATGCAGCAAACCTTAACCCTTTCCAATCTTTTCAGCAAAACCATTACTTTCACCACCAGCAACCACTCTTTCAACACCACCCTCCACAATATCACCAAAGCCTAAGCCAAGAACTTGGTTTTCTCAGACCCATCAGAGGAATCCCAGTTTACCAAAACCCTCCTCCTATGCCATTCACTCAACATCAACATCAACATCATCATCCACTTGATACTTCTTCAACCCCTTCTTCTCTTTCCAACACCAACACAGCTTCAACCCCTTTTCAATCTCAGGCTTTGATGAGGTCAAGATTCTTGTCACGCTTCCCTGCTAAGCGTAGCATGAGAGCTCCCAGGATGCGTTGGACTACTACACTCCATGCTCGCTTTGTTCATGCCGTTGAGCTCTTGGGTGGCCATGAAAGGGCTACTCCAAAATCAGTTCTTGAGCTAATGGATGTAAAGGATCTCACTTTAGCCCATGTTAAGTCTCATTTACAGATGTACCGGACGGTGAAAACCACAGATAGAGCAGCAGCTTCTTCAGGGCAATCGGATGTTTATGACAATGGATCATCTGGAGATACTTCTGATGACTTAATGTTTGATATCAACTCTTCAAGAAGATCTGATCTCTCCATTAAGCAGCAGGGAAGATCAAGTGTTAATCAAGATAATAATAAGGAATGTCATGCCCTTTGGAGCAATTCTTCCAGTAATGGGAAATATTCTCTCCATGTGTTTGGTTGTAACAGGGAAGCTTGGTTGCATGGCAAGCCAAAGGGTGATTCTTGTGTTGGAAACGTGCCTTCTCTTGAGAAGGAAATTGATCCAAAATGCTTAAGCTATGAGAGACTATCAGATGGAAGTTCATCCTCAAACGTTTCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCTTGGGCCAGCCCCTTTAA 1185 0.4329 MELFPAQPDLSLQISPPNTKPTSSWRRTTEEDMDLGFWKRALESRNSISSMAKTDTTSFDLSLSNPRPSSESNNTSNLIHHFQNGNAANLNPFQSFQQNHYFHHQQPLFQHHPPQYHQSLSQELGFLRPIRGIPVYQNPPPMPFTQHQHQHHHPLDTSSTPSSLSNTNTASTPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAASSGQSDVYDNGSSGDTSDDLMFDINSSRRSDLSIKQQGRSSVNQDNNKECHALWSNSSSNGKYSLHVFGCNREAWLHGKPKGDSCVGNVPSLEKEIDPKCLSYERLSDGSSSSNVSGSSPKKPNLDLEFTLGQPL. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01943 394 Gene3D - 196 253 - -
Seca9g01943 394 Pfam Myb-like DNA-binding domain 198 249 IPR001005 -
Seca9g01943 394 MobiDBLite consensus disorder prediction 142 173 - -
Seca9g01943 394 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 393 IPR044847 GO:0000976|GO:0006355|GO:0010158
Seca9g01943 394 FunFam Myb family transcription factor 195 253 - -
Seca9g01943 394 NCBIfam myb-like DNA-binding domain, SHAQKYF class 197 250 IPR006447 GO:0003677
Seca9g01943 394 MobiDBLite consensus disorder prediction 155 173 - -
Seca9g01943 394 MobiDBLite consensus disorder prediction 364 382 - -
Seca9g01943 394 SUPERFAMILY Homeodomain-like 194 250 IPR009057 -
Seca9g01943 394 MobiDBLite consensus disorder prediction 364 394 - -
Seca9g01943 394 MobiDBLite consensus disorder prediction 255 281 - -
Seca9g01943 394 MobiDBLite consensus disorder prediction 1 28 - -
Seca9g01943 394 MobiDBLite consensus disorder prediction 56 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01943 Seca-Chr9 31297465 31302462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01943 1 393 G2-like Transcription Factor Family AT4G17695 36.867 2.61e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca9g01943 Myb_DNA-binding 1.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01943 - - aprc:113868756 583.948