Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01935 ATGAGCTTTCAGGATATCGAGGCCGGCCGGCCTTTCGCTTCCCGGCGCAACCTCATCAACGGCAAGCAGGACCCGACGCAGGCCGTTGCTTCCGGCATATTTCAGATCAACACCGCCGTCTCCACGTTTCAGAGGCTCGTTAACTCCCTCGGAACCCCTAAAGACACGCCTGAGCTCCGCGAAAAGCTGCACAAGACGAGACTGCACATTGGACAATTGGTGAAGGATACATCGGCTAAACTTAAACAAGCAAGTGAAATTGATCACCATGCTGATGTTAATGCAAACAAGAAGATAGCTGATGCCAAACTCGCGAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAAGCACAGCGTCTTGCAGCTGAGAGGGAGACAGCTTACACTCCTTTTGTTCCTCAAGCAGTTCCATCCAGCTATACAGCCAACGAAGTAGATGTCAGTTCTGATAAGAGTCCAGAACAGCGTGCCCTTCTTGTGGAATCCAGAAGACAGGATGTACTATTCTTAGATAATGAAATTTCCTTCAATGAGGCTATCATTGAGGAAAGAGAGCAGGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTAAATGAGATTTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGAGCAATGATTGATGATATTGGGTCCAACATTGAGCATTCCCATGAAGCAACTATACAAGCAAAATCTCAACTTGCGAAAGCTTCAAAGACACAAAGATCAAATTCTTCTTTGACATGCTTGCTTTTGGTGATATTTGGGATCGTACTTCTCATCGTCATCATCGTAGTTGCTGCTTAG 819 0.453 MSFQDIEAGRPFASRRNLINGKQDPTQAVASGIFQINTAVSTFQRLVNSLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHADVNANKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVPSSYTANEVDVSSDKSPEQRALLVESRRQDVLFLDNEISFNEAIIEEREQGIQEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATIQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVVAA. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01935 272 Pfam SNARE domain 216 267 IPR000727 -
Seca9g01935 272 SMART SynN_4 13 127 IPR006011 GO:0016020
Seca9g01935 272 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 179 241 IPR000727 -
Seca9g01935 272 ProSitePatterns Syntaxin / epimorphin family signature. 185 224 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca9g01935 272 SMART tSNARE_6 174 241 IPR000727 -
Seca9g01935 272 SUPERFAMILY t-snare proteins 22 234 IPR010989 GO:0016020|GO:0016192
Seca9g01935 272 Gene3D - 173 272 - -
Seca9g01935 272 PANTHER SYNTAXIN 26 263 IPR045242 -
Seca9g01935 272 FunFam Syntaxin-22 like 20 133 - -
Seca9g01935 272 Gene3D - 20 133 - -
Seca9g01935 272 FunFam Syntaxin-22 like 172 272 - -
Seca9g01935 272 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Seca9g01935 272 CDD SynN 23 156 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01935 Seca-Chr9 31201139 31205090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01935 1 260 SNARE and Associated Proteins AT5G46860 77.395 9.82e-145 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01935 - - gmx:100810149 429.483