Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01933 ATGACATTGGTTATCAGAGAGAGGAGACACAAGCAAGCTCTAAAGCTTTCCTTACCAAAACCTCAAATTCCATCATCTGATTTCCTCCGCCAAACCCACATGCCATTATTGTTGCCATCTCCCTCCTTCCATTTAGACTCTTCTCCAAACATCAGGAACCTTTCAGATCTAGAGAAAGTAGCAGTACTTGGCCATGGGAATGGTGGCACAGTTTATAAAGTTTATCACAAGAAAAGCCATTCTTTTTATGCATTGAAAGTCCTACGCTTTAATCAGAATGGTGTTGGCATCCGTCAACCTGCTACATTGGAGGCTGAGATTCTCAAACGAGTGGATTCCCCATTTATAGTAAGGTGTCATGCAGTTTTTGACAATGGTAATTGCAATGATGCTGATAACAATGGAGGAGGTGATCTTAGCTTTGTTATGGAATACATGGAAGGAGGATCATTGCATGATGTGTTGAGAGAACACCATAGATTGCCAGAGGAGGTGATCTCTGTCTTTGCAAAGCGTGTATTAGAAGGGCTCAACTATTTACATGGGATGCATATTGTGCATAGAGATATTAAACCCTCAAATTTGCTTGTGAATGATAAAGGGGAGGTGAAAATTGCAGACTTTGGGGTCAGTCATGTAGTGGAAGGAAGATTTGAGGCAACAGAGCTCAATGCAGGCACATGTGCGTACATGAGTCCAGAAAGGGTTGATCCAGAGAGATGGGGTGGTGAAAATGCAGATGAGTATGCAGGGGATGTGTGGTCACTGGGAGTGGTGATGTTGGAATGCTTTTTGGGTTATTTCCCTTTGATTGGACCAGGGCAGAGACCAGATTGGGCAACTTTGATGTGGGCAATTTGTTTTGGTGACAAGCTTGAAATGCCAGAAAAGGCATCATCAGAGTTTCAGAATTTAGTAAGAAGGTGTCTTGAGAAGGATTGGAGGAAGAGAGCAACAGTGTTTGAGCTTCTTCATCATCCTTTTGTAAACAGAAATTGTTGCTGTTCTAGCAAAGGGCTGGGAGATTATGTTCTTCGGAGTGAAGTTCACTAG 1053 0.4264 MTLVIRERRHKQALKLSLPKPQIPSSDFLRQTHMPLLLPSPSFHLDSSPNIRNLSDLEKVAVLGHGNGGTVYKVYHKKSHSFYALKVLRFNQNGVGIRQPATLEAEILKRVDSPFIVRCHAVFDNGNCNDADNNGGGDLSFVMEYMEGGSLHDVLREHHRLPEEVISVFAKRVLEGLNYLHGMHIVHRDIKPSNLLVNDKGEVKIADFGVSHVVEGRFEATELNAGTCAYMSPERVDPERWGGENADEYAGDVWSLGVVMLECFLGYFPLIGPGQRPDWATLMWAICFGDKLEMPEKASSEFQNLVRRCLEKDWRKRATVFELLHHPFVNRNCCCSSKGLGDYVLRSEVH. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01933 350 SMART serkin_6 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01933 350 SUPERFAMILY Protein kinase-like (PK-like) 33 332 IPR011009 -
Seca9g01933 350 PRINTS Tyrosine kinase catalytic domain signature 179 197 IPR001245 GO:0004672|GO:0006468
Seca9g01933 350 PRINTS Tyrosine kinase catalytic domain signature 298 320 IPR001245 GO:0004672|GO:0006468
Seca9g01933 350 PRINTS Tyrosine kinase catalytic domain signature 251 273 IPR001245 GO:0004672|GO:0006468
Seca9g01933 350 PRINTS Tyrosine kinase catalytic domain signature 143 156 IPR001245 GO:0004672|GO:0006468
Seca9g01933 350 FunFam Mitogen-activated protein kinase kinase 1 40 147 - -
Seca9g01933 350 ProSiteProfiles Protein kinase domain profile. 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01933 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Seca9g01933 350 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 48 332 - -
Seca9g01933 350 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Seca9g01933 350 CDD PKc_MAPKK_plant_like 55 330 - -
Seca9g01933 350 Pfam Protein kinase domain 58 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01933 350 Gene3D Phosphorylase Kinase; domain 1 43 143 - -
Seca9g01933 350 Gene3D Transferase(Phosphotransferase) domain 1 144 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01933 Seca-Chr9 31194028 31195080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01933 1 330 MAP Kinase Kinase Gene Family AT1G32320 52.121 1.82e-106 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Seca9g01933 Pkinase 5.4e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01933 K20604 - gmx:100817973 579.711