LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca9g01932	ATGGACGGAGCGAGCGGCGGAGACGGCGGCTCAGCCCAGTTGCCGGCGCCGGCGCCGATGTCGAACGCGAACGCGCCTCCGCCGTTTCTGAGCAAGACGTATGACATGGTGGATGACCCTTCAACCGACGCGATAGTGTCTTGGAGCGCAACCAACAACAGCTTCGTAGTTTGGGACCCACCCGAATTCGCAAGGGACCTTTTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTAGGCAGTTAAATACATATGTATGTTCTGTTCCACCCTTCTTCTTCTTTTGCTTTGCATTTTCTTCATTGAAGTTGGGTTTCAGGAAGGTCGATCCTGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTCGTAGAAAACCTGCCCATGGACATAATCAACAGGCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAACCAGCTGCAGGCAATGGTTCAACGGCTTCAGGGAATGGAACAACGACAACAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTTCAACAGCAAAATGAGAGCAATAGTAGGCGTATAACTGAAGTTAACAAAAAGCGTCGGCTCAAGCAGGAAGGTATTGTTGAAACAGAGCGCACTACTGCTCCTGATGGACAAATTGTTAAATATCAACCTCTGATGAATGAAGCAGCAAAAACAATGCTAAGGAAGATAATGAAATGGGATGCTTCTCGTGTAGAATCTTTCAATAAAAACCCTGAAAATTACTTGATTGGTGATGGTTCATCATCCAGTGCAATGGACAGTAGCAGCACTTCAAGCTGGACTTCTGGAGTAACACTTCAAGAAGTCCCTCCAGCTTCAGTGCAGTCTTCTCACATTCCAGCTGCTGCAACGGTGACTCAAGGACATGTCCCCTCAGCAGAAAAACCTGAAATTCTATCTGTACCACAACCTGCAGCTTCTGAAAAAGTTATAAAGGATGGAGCACATGAGGCACCTTCTATCCCTGTTTCTCAAACAGATGTGATCATGCCTGATCTTCCTTCAATACCGGAGATAGTTCCAGGAAGTATTCTTTATATTCCTGAGGAAAATTATATGACTGCTGAGACAGATGAGGGATATATGGATCCTAATTCACTGGGAGTTGGTGGGTCATTTCCCATTGATTTTGAAGGTATTTCATCTGATGCAGACATCGATGATTTGTTAGCCAATCCTTCTATTTGGGATGATCTTTTGCGAACTCCAGTTCCAGAGGATATTGAGACCAATGTCGCCGAAGTATCTAAAGGGAATGAGGTACAGCCAACGGAAAATGGATGGGACAAAACTCAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCAGAAAGACTTGATTGTCTATGA	1569	0.4551	MDGASGGDGGSAQLPAPAPMSNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYVCSVPPFFFFCFAFSSLKLGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNSRRITEVNKKRRLKQEGIVETERTTAPDGQIVKYQPLMNEAAKTMLRKIMKWDASRVESFNKNPENYLIGDGSSSSAMDSSSTSSWTSGVTLQEVPPASVQSSHIPAAATVTQGHVPSAEKPEILSVPQPAASEKVIKDGAHEAPSIPVSQTDVIMPDLPSIPEIVPGSILYIPEENYMTAETDEGYMDPNSLGVGGSFPIDFEGISSDADIDDLLANPSIWDDLLRTPVPEDIETNVAEVSKGNEVQPTENGWDKTQHMDQLTEQMGLLSSDAERLDCL.	523

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca9g01932	522	Coils	Coil	165	192	-	-
Seca9g01932	522	Gene3D	-	21	138	IPR036388	-
Seca9g01932	522	FunFam	Heat shock transcription factor 1	22	138	-	-
Seca9g01932	522	MobiDBLite	consensus disorder prediction	1	20	-	-
Seca9g01932	522	MobiDBLite	consensus disorder prediction	309	345	-	-
Seca9g01932	522	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	17	321	IPR027725	-
Seca9g01932	522	PRINTS	Heat shock factor (HSF) domain signature	29	52	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Seca9g01932	522	PRINTS	Heat shock factor (HSF) domain signature	67	79	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Seca9g01932	522	PRINTS	Heat shock factor (HSF) domain signature	80	92	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
Seca9g01932	522	SUPERFAMILY	"Winged helix" DNA-binding domain	24	137	IPR036390	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca9g01932	Seca-Chr9	31186545	31191147	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca9g01932	15	513	HSF	AT1G32330	52.692	2.01e-162	468

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Seca9g01932		HSF_DNA-bind	4.8e-30	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca9g01932	K09419		-	gmx:100815121	765.763

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