Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01932 ATGGACGGAGCGAGCGGCGGAGACGGCGGCTCAGCCCAGTTGCCGGCGCCGGCGCCGATGTCGAACGCGAACGCGCCTCCGCCGTTTCTGAGCAAGACGTATGACATGGTGGATGACCCTTCAACCGACGCGATAGTGTCTTGGAGCGCAACCAACAACAGCTTCGTAGTTTGGGACCCACCCGAATTCGCAAGGGACCTTTTGCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTAGGCAGTTAAATACATATGTATGTTCTGTTCCACCCTTCTTCTTCTTTTGCTTTGCATTTTCTTCATTGAAGTTGGGTTTCAGGAAGGTCGATCCTGATCGCTGGGAATTTGCAAATGAGGGCTTTTTGAGGGGTCAAAAGCACTTGCTTAGGAGTATAACTCGTAGAAAACCTGCCCATGGACATAATCAACAGGCTCAGCAACCACATGGACAGAGTTCATCAGTAGGGGCATGTGTAGAAGTTGGGAAGTTTGGGCTTGAGGAAGAGGTTGAGAGGCTTAAAAGAGATAAGAATGTGCTCATGCAAGAGCTTGTGAGGTTGAGACAGCAGCAACAGACCACTGATAACCAGCTGCAGGCAATGGTTCAACGGCTTCAGGGAATGGAACAACGACAACAGCAAATGATGTCATTCCTTGCAAAAGCTGTCCAGAGCCCTGGCTTCTTTGCTCAGTTTGTTCAACAGCAAAATGAGAGCAATAGTAGGCGTATAACTGAAGTTAACAAAAAGCGTCGGCTCAAGCAGGAAGGTATTGTTGAAACAGAGCGCACTACTGCTCCTGATGGACAAATTGTTAAATATCAACCTCTGATGAATGAAGCAGCAAAAACAATGCTAAGGAAGATAATGAAATGGGATGCTTCTCGTGTAGAATCTTTCAATAAAAACCCTGAAAATTACTTGATTGGTGATGGTTCATCATCCAGTGCAATGGACAGTAGCAGCACTTCAAGCTGGACTTCTGGAGTAACACTTCAAGAAGTCCCTCCAGCTTCAGTGCAGTCTTCTCACATTCCAGCTGCTGCAACGGTGACTCAAGGACATGTCCCCTCAGCAGAAAAACCTGAAATTCTATCTGTACCACAACCTGCAGCTTCTGAAAAAGTTATAAAGGATGGAGCACATGAGGCACCTTCTATCCCTGTTTCTCAAACAGATGTGATCATGCCTGATCTTCCTTCAATACCGGAGATAGTTCCAGGAAGTATTCTTTATATTCCTGAGGAAAATTATATGACTGCTGAGACAGATGAGGGATATATGGATCCTAATTCACTGGGAGTTGGTGGGTCATTTCCCATTGATTTTGAAGGTATTTCATCTGATGCAGACATCGATGATTTGTTAGCCAATCCTTCTATTTGGGATGATCTTTTGCGAACTCCAGTTCCAGAGGATATTGAGACCAATGTCGCCGAAGTATCTAAAGGGAATGAGGTACAGCCAACGGAAAATGGATGGGACAAAACTCAACATATGGATCAACTTACAGAGCAGATGGGTCTTCTTTCTTCTGATGCAGAAAGACTTGATTGTCTATGA 1569 0.4551 MDGASGGDGGSAQLPAPAPMSNANAPPPFLSKTYDMVDDPSTDAIVSWSATNNSFVVWDPPEFARDLLPKYFKHNNFSSFVRQLNTYVCSVPPFFFFCFAFSSLKLGFRKVDPDRWEFANEGFLRGQKHLLRSITRRKPAHGHNQQAQQPHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQAMVQRLQGMEQRQQQMMSFLAKAVQSPGFFAQFVQQQNESNSRRITEVNKKRRLKQEGIVETERTTAPDGQIVKYQPLMNEAAKTMLRKIMKWDASRVESFNKNPENYLIGDGSSSSAMDSSSTSSWTSGVTLQEVPPASVQSSHIPAAATVTQGHVPSAEKPEILSVPQPAASEKVIKDGAHEAPSIPVSQTDVIMPDLPSIPEIVPGSILYIPEENYMTAETDEGYMDPNSLGVGGSFPIDFEGISSDADIDDLLANPSIWDDLLRTPVPEDIETNVAEVSKGNEVQPTENGWDKTQHMDQLTEQMGLLSSDAERLDCL. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01932 522 Coils Coil 165 192 - -
Seca9g01932 522 Gene3D - 21 138 IPR036388 -
Seca9g01932 522 FunFam Heat shock transcription factor 1 22 138 - -
Seca9g01932 522 MobiDBLite consensus disorder prediction 1 20 - -
Seca9g01932 522 MobiDBLite consensus disorder prediction 309 345 - -
Seca9g01932 522 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 321 IPR027725 -
Seca9g01932 522 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g01932 522 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g01932 522 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g01932 522 SUPERFAMILY "Winged helix" DNA-binding domain 24 137 IPR036390 -
Seca9g01932 522 SMART hsfneu3 25 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca9g01932 522 Pfam HSF-type DNA-binding 29 137 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01932 Seca-Chr9 31186545 31191147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01932 15 513 HSF AT1G32330 52.692 2.01e-162 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca9g01932 HSF_DNA-bind 4.8e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01932 K09419 - gmx:100815121 765.763