Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01931 ATGAGAAGGACGACGGCGAAACAGCACCATCATGAATCCGACTCTGCAAAGCCTTCTTCTTCTTCTTCGCATTCGCAAGGGAGGAATCGAGGCCCACATCAACACCGTTCCAAATTGAAATTTCGCTATGTCAACAAGTCCCAACCGGTTTCTGACTCTAACTCTGTGGCGGCGGAACAACTTTCCCCTGTCCCTAACCCTCAGGATGTTGATGTCACGCCCCCAAATCACGTAATTGAGAATAGTGATGCCTCAGAGCTCAATAGAAACACCGTTGATGAGGAGGCCAATGAAGAAGATGAAGGTTATGGTGATGATAGTGTTGATTTTATGGGTAGGCTTGATAAGTTGCTCAGTAATATCCAAGAACCTGAATTGTCCGAGGAGCATATCACAATCAATGACCAATTGCAGCAAGATGAGTTGCTTGTGGTGGAGTCAATTTATGGAGAAAACGTTTTCAGCCTTGAGAGATGGAAAGGCCTTCGTTGCTTTCAGATACACATACACATTGATGTTTTGGGTGAAATTGCCATTACCACTAAGCTGAACTCTGTTAATGAACTTGAGACTGTAAGCAGCAATTCAGATGACTTCTTATACTCTTTCAAAGTCCAATATCTTCCACCAATTGTTTTGACATGTTTATTGCCTAAGTCATACCCAAGCCACCAACCACCTATATTTACAATCTCTGTTAAGTGGTTGGAATCATCAAAGATTTTAAGTCTCTGCTCCGAGTTGGATTCGATATGGGCAGAACAGCAGGGGCAGGAAGTAATTTACCACTGGGTTGAATGGTTACATAGTTCTTCTCTTTCACATCTGGGATTTGATAAGGAGATTATACTAGGTCCTTATGGCATGAATCGTGTTGTAGACATGCGAGTGCTTTCAGGTATCAAATGCATTGATGTTGATATTCCTTTTCTACGAAGCTACAACAATGAGAGACACCATGAGAACTTCCTCAAAGAATTACATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACTGAGTTTGTCCAGTTACCGTGTAAGCATTTTTTTTGCCTCAAATGCTTGCGGACCTTTACTCAGATACATGTAAAAGAAGGAACCGTTAGTAATCTTCAATGTCTTGACGCAAAATGTACGGTTATGATTCCACCTGGCCTTTTAAAACATTTGCTGGATGACCAAGATTTTGAACGCTGGGAATCCATGATGTTGGAGAAATCACTTGCATCAATGTCTGATGTTGTGTTTTGCCCAAGATGTGAAACACCTTGTATAGAGGATGACGACCAGCATGCTCAATGCCCAAAATGTTTTTTTAGCTTTTGTACCCTTTGCAGGGAACGGCGCCATGTTGGCATAGCATGCATGACACTGGAAATGAAACTTAAGATTTTACAGGACCGTCAAAATTCATCTCAATTAAAGGGAGACCAAAAGCGTAGGGAACTTGAAATGATCAATGAAATGCTCAGTATGAAAGAAATTCGTCGTGATTCCAAGCTGTGCCCTTCTTGTGACATGGCAATTTCTCGAACTGAAGGTTGCAACAAAATGAAGTGCAGTAATTGTGAACAGTACTTCTGTTACCGCTGCAACAAAGCAATTGATGCATCGGATCCATATGGACATTTCAGGGATGGGTCGTGTGAATTGTTCCCACGAGAAATGGTTGAGACCTGGCAAGAGCGCATAAATCCTCGCCAAGCAGTAGGACAATTACAGGCTGAACTCTTTCCTCAACGTGGAACGACATGTCCTAGTTGTCGTCAATTTAATGCAAAGATTGGAAACAATAATCACATGTTTTGCTGGGCATGCCAGAGCCATTACTGCTACTTATGCAACGAGATTGTCAGGCGCGGCACTAGGCATTATGGACCAAAAGGCTGCAAGCAGCATACCGAGGGATAG 1914 0.4242 MRRTTAKQHHHESDSAKPSSSSSHSQGRNRGPHQHRSKLKFRYVNKSQPVSDSNSVAAEQLSPVPNPQDVDVTPPNHVIENSDASELNRNTVDEEANEEDEGYGDDSVDFMGRLDKLLSNIQEPELSEEHITINDQLQQDELLVVESIYGENVFSLERWKGLRCFQIHIHIDVLGEIAITTKLNSVNELETVSSNSDDFLYSFKVQYLPPIVLTCLLPKSYPSHQPPIFTISVKWLESSKILSLCSELDSIWAEQQGQEVIYHWVEWLHSSSLSHLGFDKEIILGPYGMNRVVDMRVLSGIKCIDVDIPFLRSYNNERHHENFLKELHECCICYSEYPGTEFVQLPCKHFFCLKCLRTFTQIHVKEGTVSNLQCLDAKCTVMIPPGLLKHLLDDQDFERWESMMLEKSLASMSDVVFCPRCETPCIEDDDQHAQCPKCFFSFCTLCRERRHVGIACMTLEMKLKILQDRQNSSQLKGDQKRRELEMINEMLSMKEIRRDSKLCPSCDMAISRTEGCNKMKCSNCEQYFCYRCNKAIDASDPYGHFRDGSCELFPREMVETWQERINPRQAVGQLQAELFPQRGTTCPSCRQFNAKIGNNNHMFCWACQSHYCYLCNEIVRRGTRHYGPKGCKQHTEG. 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01931 637 MobiDBLite consensus disorder prediction 44 62 - -
Seca9g01931 637 SUPERFAMILY UBC-like 134 270 IPR016135 -
Seca9g01931 637 SUPERFAMILY RING/U-box 325 409 - -
Seca9g01931 637 Pfam IBR domain, a half RING-finger domain 398 456 IPR002867 GO:0008270
Seca9g01931 637 Pfam IBR domain, a half RING-finger domain 497 536 IPR002867 GO:0008270
Seca9g01931 637 FunFam RBR-type E3 ubiquitin transferase 325 409 - -
Seca9g01931 637 CDD RING-HC_ITT1-like 324 383 - -
Seca9g01931 637 SUPERFAMILY RING/U-box 398 461 - -
Seca9g01931 637 FunFam RBR-type E3 ubiquitin transferase 471 580 - -
Seca9g01931 637 FunFam RBR-type E3 ubiquitin transferase 126 277 - -
Seca9g01931 637 ProSiteProfiles Zinc finger RING-type profile. 330 374 IPR001841 -
Seca9g01931 637 Pfam RWD domain 136 270 IPR006575 GO:0005515
Seca9g01931 637 SMART RWD2001b 140 275 IPR006575 GO:0005515
Seca9g01931 637 SMART ibrneu5 485 550 IPR002867 GO:0008270
Seca9g01931 637 SMART ibrneu5 398 456 IPR002867 GO:0008270
Seca9g01931 637 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 168 540 IPR031127 GO:0004842|GO:0016567
Seca9g01931 637 Gene3D - 473 579 - -
Seca9g01931 637 ProSiteProfiles TRIAD supradomain profile. 326 556 IPR044066 -
Seca9g01931 637 ProSiteProfiles RWD domain profile. 140 275 IPR006575 GO:0005515
Seca9g01931 637 MobiDBLite consensus disorder prediction 1 106 - -
Seca9g01931 637 Gene3D Ubiquitin Conjugating Enzyme 127 277 IPR016135 -
Seca9g01931 637 SUPERFAMILY RING/U-box 490 545 - -
Seca9g01931 637 ProSitePatterns Zinc finger RING-type signature. 347 356 IPR017907 -
Seca9g01931 637 CDD BRcat_RBR_RNF14 409 460 - -
Seca9g01931 637 CDD Rcat_RBR_RNF14 488 553 IPR047548 GO:0008270
Seca9g01931 637 SMART ring_2 586 615 IPR001841 -
Seca9g01931 637 SMART ring_2 330 377 IPR001841 -
Seca9g01931 637 SMART ring_2 418 506 IPR001841 -
Seca9g01931 637 SUPERFAMILY RING/U-box 581 634 - -
Seca9g01931 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 413 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01931 Seca-Chr9 31178873 31184012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01931 325 558 ARIADNE family AT3G27710 23.237 8.90e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01931 K11971 - gmx:100500662 979.548