Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01929 ATGGTTGGTAGAACAACTGTGATAGTGGCACACAGACTTTCTACCATTAGGAATGCAGATGTGATTGCTGTTGTACAAGGAGGGAGGATTGTGGAAACTGGTAACCATGAAGAACTCATTTCCAACCCAACTAGTGTATATGCTTCTCTTGTTCAACTCCAAGAGGCAACTTCTTTGGAACGCCTCCCCTCAGTTGGATCTAGCTTGGGACGACAATCAAGCATAAATTACTCAAGAGAATTATCCCGTAGTGTCAGAAGCTTCGGTGGTAGTTTTCGATCAGATAAGGACTCTATTGGTCGGGTTTGTGCTGATGAAGGAGAAAAGGGAGGCAAGCCAAAGCACGTTTCAGCAAGAAGGCTATATTCTATGGTTGGTCCTGACTGGTTTTATGGGGTTTTTGGGACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCACTTTTTGCACTTGGAATATCTCATGCTCTTGTATCATACTATATGGACTGGGATACAACACGTCATGAAGTAAAAAAAATTGCTTTCCTTTTCTGTGGAGCAGCAGTTATAACTATCACTGTCCATGCCATTGAACATCTTTCTTTTGGAATCATGGGCGAGCGACTTACCCTTCGTGTCAGAGAAATGATGTTTTCTGCTATTCTGAAGAATGAAATTGCCTGGTTTGATGATACAAGCAACACAAGTTCTATGCTTTCATCGCGTTTAGAGACTGATGCAACTTTATTACGAACTATAGTTGTTGATCGTTCTACAATTCTGTTACAGAATGTTGGTCTGGTTGTTGCTTCATTTATTATTGCCTTTCTCTTGAACTGGAGAATAACACTTGTTGTCATAGCCACATATCCTTTGATCATTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAATTTGAGCAAAGCATATTTGAAAGCTAACATGCTGGCTGGGGAGGCTGTGAGCAATATACGCACTGTTGCTGCATTTTGTTCTGAAGAAAAGATCCTTGACCTTTATTATAATGAGCTTATTGAACCTTCCAAACGTTCATTTCAACGGGGCCAAATTGCTGGCATATTCTATGGCATTTCTCAATTCTTTATTTTCTCATCTTATGGCCTAGCCTTGTGGTATGGATCTGTTTTGATGGGAAAGGAGCTTGCTAGCTTTAAATCAGTTATGAAGTCTTTTATGGTTTTAATTGTAACAGCATTGGCTATGGGGGAGACTTTGGCACTAGCCCCAGACCTTTTGAAAGGGAATCAAATGGTTGCATCAGTTTTTGAAGTGATGGATAGAAAATCAGGAATAGTGTGTGATACTGGAGAAGAGTTGAAGACAGTGGAGGGAACAATTGAGCTTAGAAGAATCCATTTCAACTACCCTTCAAGGCCAGATGTGATTATTTTCAAGGATTTCAACCTAAAAGTTCCTGCAGGCAAGAGTATTGCCTTAGTAGGACAAAGTGGTTCTGGTAAAAGCTCTGTGATCTCCCTTATACTCAGATTTTATGATCCAACATCTGGGAAGGTGTTAATTGATGGAAAAGACATCACAAGACTTAATCTGAAATCTCTTAGGAAGCATATTGGTCTTGTGCAACAAGAACCAGCTCTTTTTGCAACATCAATATATGAAAATATTCTTTATGGGAAGGAAGGTGCCTCTGATTCAGAAGTGATTGAAGCAGCTAAGCTAGCAAATGCTCATAACTTTATAAGTGGTCTTCCAGATGGCTACTCCACCAAAGTGGGTGAAAGAGGAGTGCAACTATCTGGTGGCCAGAGACAAAGAGTGGCCATTGCCAGAGCTGTTTTAAAGAACCCTGAAATCTTGCTACTTGATGAAGCCACCAGTGCATTGGATGTGGAGTCAGAGCGTGTGGTACAACAAGCTTTGGACAGATTAATGCAGAACAGAACAACAGTTATGGTGGCACATAGGCTATCCACAATAAGGAATGCAGACCAAATCTCAGTTTTACAGGATGGAAAGATAATTGAGCATGGGACTCATTCAAGTCTTATAGAGAATAAAAATGGGGCATACTTTAAATTAGTCAACCTTCAACAACAACAACATCAATCATAG 2091 0.4041 MVGRTTVIVAHRLSTIRNADVIAVVQGGRIVETGNHEELISNPTSVYASLVQLQEATSLERLPSVGSSLGRQSSINYSRELSRSVRSFGGSFRSDKDSIGRVCADEGEKGGKPKHVSARRLYSMVGPDWFYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTRHEVKKIAFLFCGAAVITITVHAIEHLSFGIMGERLTLRVREMMFSAILKNEIAWFDDTSNTSSMLSSRLETDATLLRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVIATYPLIISGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKILDLYYNELIEPSKRSFQRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKSGIVCDTGEELKTVEGTIELRRIHFNYPSRPDVIIFKDFNLKVPAGKSIALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDITRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPDGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEHGTHSSLIENKNGAYFKLVNLQQQQHQS. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01929 696 ProSitePatterns ABC transporters family signature. 591 605 IPR017871 GO:0005524|GO:0016887
Seca9g01929 696 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 133 419 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g01929 696 SUPERFAMILY ABC transporter transmembrane region 114 433 IPR036640 GO:0005524|GO:0016020
Seca9g01929 696 Gene3D - 442 691 IPR027417 -
Seca9g01929 696 Gene3D - 2 55 IPR027417 -
Seca9g01929 696 PANTHER ABC TRANSPORTER B FAMILY 1 57 IPR039421 -
Seca9g01929 696 FunFam ABC transporter B family member 2 253 449 - -
Seca9g01929 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 445 690 IPR027417 -
Seca9g01929 696 Gene3D ABC transporter type 1, transmembrane domain 91 302 IPR036640 GO:0005524|GO:0016020
Seca9g01929 696 SMART AAA_5 479 665 IPR003593 GO:0016887
Seca9g01929 696 Pfam ABC transporter transmembrane region 134 405 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca9g01929 696 FunFam ABC transporter B family member 4 442 695 - -
Seca9g01929 696 Gene3D ABC transporter type 1, transmembrane domain 366 694 IPR036640 GO:0005524|GO:0016020
Seca9g01929 696 Pfam ABC transporter 471 619 IPR003439 GO:0005524
Seca9g01929 696 CDD ABC_MTABC3_MDL1_MDL2 452 690 - -
Seca9g01929 696 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 452 688 IPR003439 GO:0005524
Seca9g01929 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 54 IPR027417 -
Seca9g01929 696 CDD ABC_6TM_Pgp_ABCB1_D2_like 122 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01929 Seca-Chr9 31146240 31153899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01929 106 696 Calmodulin-binding Proteins AT2G36910 41.860 9.05e-134 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01929 K05658 - gmx:100819045 1244.57