Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01921 ATGTCTCCTTCAAAAGCAGATAATTCAGAAACTCCATCACAACCAGCAGCTACAACCTACAGCACCTCACCAGCGCTTGTAGCCTTCACACTCGCCGTGGTTGTGATTTGCTTTGTAGGTTTCAGCGTAGTTTACTTCTGCAGGTGTTATTTTGCAAGTTTCATGCACACTTGGGCATTTCAACGAACAGCTTCAGGCACCATCGTTCGTCTTTCCAACAACAATCAATCTCCAAACAGAGGCCTCGATTCTTCTCTTCTCCAATCCTTCCCTTCCTTTCTCTATTCCTCTGTCAAGAATCTCCGTAAGGAGAAAAACTATAGCCTCGAATGCGCCATTTGTTTGTTGGAGTTCGAGGAAGATAGCATGCTTCGTCTTCTAACCGTTTGCTACCATGTCTTCCATCAAGAATGCATTGACCTCTGGCTCAGTTCACACAAGACTTGCCCTGTTTGTCGTAAGGATCTTGAATATTCCCCAACAAACGAAACGCGAAAGTCTCAGGAGGTTGCAGAGGATAATCTCCGTGTAGTAGAAGAGAGCAGGGATCATGTGTGCATTGAGGTAAAAGAAGATGAAGGTGAAGGTGAAGATCAGAGACATGATGATGTGGCTGTAGTTTCGGTGAAGGAACAGGGAGAACAGAGATTTGCACGGTCACACTCAACAGGGCATTCTATAGTTATGATTAGAGAAGGAGATGAAGGAAAGGATGATGAAAAATATACGTTGAGATTACCAGAACATGTAGCGTTCAAATTTGTAAGAGGAGGGCATAACTGCACAAAGAGTTGTTCAAGTTATAAGGATATGGTTGCAGCAAGGCCTGTTGGTACATGCATCTTGTAG 849 0.4393 MSPSKADNSETPSQPAATTYSTSPALVAFTLAVVVICFVGFSVVYFCRCYFASFMHTWAFQRTASGTIVRLSNNNQSPNRGLDSSLLQSFPSFLYSSVKNLRKEKNYSLECAICLLEFEEDSMLRLLTVCYHVFHQECIDLWLSSHKTCPVCRKDLEYSPTNETRKSQEVAEDNLRVVEESRDHVCIEVKEDEGEGEDQRHDDVAVVSVKEQGEQRFARSHSTGHSIVMIREGDEGKDDEKYTLRLPEHVAFKFVRGGHNCTKSCSSYKDMVAARPVGTCIL. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01921 282 SMART ringv_2 110 153 IPR011016 GO:0008270
Seca9g01921 282 CDD RING-H2_EL5-like 110 153 - -
Seca9g01921 282 PANTHER RING FINGER DOMAIN-CONTAINING 9 162 - -
Seca9g01921 282 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Seca9g01921 282 SMART ring_2 111 152 IPR001841 -
Seca9g01921 282 FunFam E3 ubiquitin-protein ligase ATL6 70 159 - -
Seca9g01921 282 SUPERFAMILY RING/U-box 92 159 - -
Seca9g01921 282 Pfam Ring finger domain 110 153 IPR001841 -
Seca9g01921 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 159 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01921 Seca-Chr9 31037979 31038827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01921 4 256 Rapid Response to Elicitors AT3G05200 37.262 4.55e-38 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01921 - - ccaj:109800443 319.701