Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01918 ATGGCATCTCTAGGCAACCCAAAAGCTTGGGTTCCATACATGAACAACAAAGACTGTACTCAAGGATTTTGCAGCTTCTATTGTCCACAGTGGTGTTATGTAATCTATCCTCCTCCTCCTCCTTCTCCCTTTGAATTTCCTGATGATGATTCAAGTCCAAATTTCTCCCCTCTTGTTATTGCAGTCATTGGAATCTTGGCCAGTGCTTTTCTTCTTGTGAGTTATTATACCATAATATCCAAGTACTGTGGCCGCAGAGAACCTTCACAAGGTGAAAACCATGAAGGAAACACTGAATTGGAAGAGAATCACAACCCTTCACTCCATGAACCATGGCATGTTTCAACCACTGGCTTAGATGAGGCTTTGATTAAGTCCATAACAGTTTGCAAGTACAAGAAAGAAGATGGTTTGGTTGATGTAGCAGATTGCTCAGTTTGTCTCAGTGAGTTTCAAGATAATGAAAGTATTAGACTTTTGCCAAAGTGCAGCCATGCTTTTCATCTCCCTTGTATTGACACGTGGCTCAAATCTCACTCCAATTGCCCTCTATGTCGTTCTAGCATTTTTACCTTCAATGCTGCAACACATTATGTTCCAGCCCCAGTTATAGAACTCCCTTCAAGGAATGATACTTCTTCAGAAAATCAACATGCAGATGAAAATGTTGGTGCTGGAAGAGACAGTGAATTGGATGCAATGGAAGAAGAAAACATGCATGGTAGAGCAGTTCCAAAGACTGCATTTCGTGCTTTTAGTGATTTAGGAAATTTGAGGGGAAGGCATAGTATAATTGAGATTAGAGATGAAGACTATGAATCCATAAGAAGGTCAGTTTCTATGGATCATTCTTTTCAAAGTTGTCTTTCTGTTGCTGATGTGCTGCATATGAATCAAGAACAAGATTCCCAAGTAGAAGGATGCTCCACTGGGGCTGGTTCATCAAAGAGATCAAGAGGTGAAAGTAGCAAGTCTAGCTATAGAAGAAGGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCCAGTGGAAGATTCTCTCTTAGCAGAAATGGCAGAGGAAGGCAGGGGATTTTGCCTGTCTGA 1098 0.408 MASLGNPKAWVPYMNNKDCTQGFCSFYCPQWCYVIYPPPPPSPFEFPDDDSSPNFSPLVIAVIGILASAFLLVSYYTIISKYCGRREPSQGENHEGNTELEENHNPSLHEPWHVSTTGLDEALIKSITVCKYKKEDGLVDVADCSVCLSEFQDNESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRSSIFTFNAATHYVPAPVIELPSRNDTSSENQHADENVGAGRDSELDAMEEENMHGRAVPKTAFRAFSDLGNLRGRHSIIEIRDEDYESIRRSVSMDHSFQSCLSVADVLHMNQEQDSQVEGCSTGAGSSKRSRGESSKSSYRRRVLHCVLSPIAMKRSFSSGRFSLSRNGRGRQGILPV. 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01918 365 FunFam RING-H2 finger protein ATL54 119 192 - -
Seca9g01918 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Seca9g01918 365 MobiDBLite consensus disorder prediction 208 227 - -
Seca9g01918 365 SUPERFAMILY RING/U-box 123 192 - -
Seca9g01918 365 MobiDBLite consensus disorder prediction 302 320 - -
Seca9g01918 365 MobiDBLite consensus disorder prediction 87 107 - -
Seca9g01918 365 MobiDBLite consensus disorder prediction 302 326 - -
Seca9g01918 365 CDD RING-H2_EL5-like 143 186 - -
Seca9g01918 365 Pfam Ring finger domain 143 186 IPR001841 -
Seca9g01918 365 SMART ring_2 144 185 IPR001841 -
Seca9g01918 365 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Seca9g01918 365 PANTHER RING-H2 FINGER PROTEIN ATL16 43 329 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01918 Seca-Chr9 31016217 31017314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01918 1 325 C3H Transcription Factor Family AT3G03550 42.486 3.27e-71 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01918 - - gmx:100792267 565.459