Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01917 ATGGCAACTCTAGAATTAGCTGTTACTGTGTTCGCACCTAAACGTTTTTCTAATAACTATCGCTTCCCAACAAAAGCACCCGACTCCTTAAAGCTCCATGCTTCCACCTCTTTCTCTTCCCTTCCTCACACTCACAACCTTCTCTTCTCTTCCAACGTCTCCTGCAAAACCCGAAGACTCTGCTTCCAGTTATGCTCTGCTTTGCAAGAGGTAGCTGCAGAAACCGCAGAGGAATCCCAGCCAATAAACAACGTCAAGAAGAAGCTCTACGTGTTCAACTTACCTTGGTCTCTGTCAACGGAAGACATCAAGGACCTCTTTGGACAATGCGGAACTGTAACAGACATCGAGATAATAAAGAACAAATATGGGAAGGGCAAAGGCTATGCCTTCATCACTATGGCTTCCGGGGAAGAGGCTCAGGCTGCTGTTGATAAATTTGACTCTCATGAAATATCGGGACGGATAATAAGGGTAGAGCTTGCAAAGAGATTCAAGAAACCTCCTCCTCCAAGTCCTCCAGGTCCCTCTCCTAGTGAGGCACGTCATGTAATTTATGCATCCAACCTTGCATGGAAAGCAAGATCTACCCACCTCAGAGATATCTTCACTGAAAATTTTAAAACACCAGTTTCAGCCAGGGTTGTATTTGATAGCCCTGCTGGAAAATCTTCCGGGTATGGATTTGTTTCTTATCTTACAAAGGAGGAAGCAGAGGCTGCCATTTCTGCTGTGGATGGGAAGGAGTTAATGGGACGGCCACTTCGCCTAAAATTCAGTGAAAAGAGAGTTAAAGAAGCTGGAAGTGAACAAGATGAAGACCAAAGCTATGATGCTCAACTGGAAGAATCATAA 855 0.448 MATLELAVTVFAPKRFSNNYRFPTKAPDSLKLHASTSFSSLPHTHNLLFSSNVSCKTRRLCFQLCSALQEVAAETAEESQPINNVKKKLYVFNLPWSLSTEDIKDLFGQCGTVTDIEIIKNKYGKGKGYAFITMASGEEAQAAVDKFDSHEISGRIIRVELAKRFKKPPPPSPPGPSPSEARHVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFDSPAGKSSGYGFVSYLTKEEAEAAISAVDGKELMGRPLRLKFSEKRVKEAGSEQDEDQSYDAQLEES. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01917 284 PANTHER OS02G0815200 PROTEIN 36 262 - -
Seca9g01917 284 SMART rrm1_1 184 258 IPR000504 GO:0003723
Seca9g01917 284 SMART rrm1_1 88 160 IPR000504 GO:0003723
Seca9g01917 284 CDD RRM_SF 89 160 - -
Seca9g01917 284 SUPERFAMILY RNA-binding domain, RBD 81 169 IPR035979 GO:0003676
Seca9g01917 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Seca9g01917 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Seca9g01917 284 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 256 IPR000504 GO:0003723
Seca9g01917 284 SUPERFAMILY RNA-binding domain, RBD 168 265 IPR035979 GO:0003676
Seca9g01917 284 MobiDBLite consensus disorder prediction 263 284 - -
Seca9g01917 284 Gene3D - 168 275 IPR012677 -
Seca9g01917 284 Gene3D - 66 167 IPR012677 -
Seca9g01917 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01917 Seca-Chr9 31008890 31012605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01917 89 284 Eukaryotic Initiation Factors Gene Family AT4G34110 24.186 5.50e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01917 - - gmx:100793319 369.392