Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01889 ATGTCTCCGCCAGCGGTGGTTACGGAGGAGGAAGGGGTAACATCTGCTTCTTCACAATCCTTGGACCGTTTCTCTCAGAATGGGGCTGGATTGAAAGAACGGAATTACCTAGGATTGTCTGATTGTTCATCAGTGGACAGTTGTGCTTCTACTGTCCCAAGCTTGACTGATGAGAAAAAGGGGAACCTGAATTTGAAGGCTACAGAGTTGAGGCTGGGTCTCCCTGGATCCCAATCACCCGAAAGGGATCCGGATCTTTACTCTTTAAGCTCAACAAAGCTTGATGAAAAGCCACTCTTCCCTTTGCTTCCTACAAAAGATGGAATCTGCTCGTCATCACAGAAAACTGTGGTTTCGGGCAACAAGAGAGGTTTTGCTGATACCATCGATGGGTTTCCTCAGGGGATAAATGTAATGCTCTCACCTAGAGCTTCTGGAGCTCAGCCCACCACAATTAAAGAAATGCCAAGCAAGGTGTTGCAAGAACGGCCTTGTGCAGCTAAAGGAACTGTTCATAACCATACAAGTGCTTCTATTAGTGGCAGTGCCCCGGCTTCTAAGGCACAGGTTGTTGGTTGGCCTCCTATTAGATCATTCAGGAAAAACTCCATGGCGACCACTTCCAAGAACAATGATGAAGTTGATGGAAAACCAGGTCTTGCTGCACTCTTTGTGAAGGTCAGCATGGATGGTGCTCCCTATCTTAGGAAGGTAGATCTAAGAAGCTATACAACATATCAGGAACTATCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCTTAGGCCAGTGTGGAGGTCCAGGAAGAGAAATGTTGAGTGAGAGCAAGCTGAGGGACCTTCTGCATGGTTCAGAATACGTTCTAACTTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAGATGTTCATTGACACTTGCAAAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCCGGGCCATGGAAAAGTCCAAAAGCAGGAGTTAG 1020 0.4657 MSPPAVVTEEEGVTSASSQSLDRFSQNGAGLKERNYLGLSDCSSVDSCASTVPSLTDEKKGNLNLKATELRLGLPGSQSPERDPDLYSLSSTKLDEKPLFPLLPTKDGICSSSQKTVVSGNKRGFADTIDGFPQGINVMLSPRASGAQPTTIKEMPSKVLQERPCAAKGTVHNHTSASISGSAPASKAQVVGWPPIRSFRKNSMATTSKNNDEVDGKPGLAALFVKVSMDGAPYLRKVDLRSYTTYQELSSALEKMFSCFTLGQCGGPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCKRLKIMKGSDAIGLAPRAMEKSKSRS. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01889 339 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 63 326 IPR003311 GO:0005634|GO:0006355
Seca9g01889 339 MobiDBLite consensus disorder prediction 11 25 - -
Seca9g01889 339 Gene3D - 219 333 - -
Seca9g01889 339 FunFam Auxin-responsive protein 217 331 - -
Seca9g01889 339 Pfam AUX/IAA family 68 330 IPR033389 -
Seca9g01889 339 SUPERFAMILY CAD & PB1 domains 222 320 - -
Seca9g01889 339 ProSiteProfiles PB1 domain profile. 222 323 IPR000270 GO:0005515
Seca9g01889 339 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01889 Seca-Chr9 30538162 30544464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01889 224 324 B3 DNA Binding Superfamily AT5G37020 33.663 2.12e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca9g01889 AUX_IAA 5.3e-88 CL0072