Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01886 ATGGAGCTTTCTCAACTTGGTTTTCTGGAGGAACTACTTGCTCCAAGAAAAGACACATGGAATGCTTTGTCCACTGGGTTGAATGAGTTACTCCCTAGTGGTTGGAGCTTTGACTCTTTTGAAGAGAACCCAGCTTTGGCTACTTTAAATCCCTCATTTGCTGCATTTTCAACCCCAATAGACCATAGATTTGAATGTCCTTATGGCAGTGAAGCAGCATACCCTTATGTTGATGGGTTCACAATGCCAGAGCTTGATTCATCATACACCAGGAATGATGAGTCAGCTCCAGTTTTACCACAAGAAGATAACCCATCAGTGGAGGAAATTGATGAAGAGTTTGGCTTTCTGGGCAGTGATAAGCAGTGTTTGGAACAAATAAAAAATAGCTGCAAAATTGAGGAACAAGTTACAGAGATTCCAGTCTTCAACATGGGCTTATGTGGAGATAAAAAGCCCAAATCCAAAAAGCTAGAAGGACAGCCTTCAAAGAATCTCATGGCAGAAAGAAGGAGAAGAAAGCGCCTCAATGACCGGCTTTCCATGCTAAGGTCAATAGTCCCTAAGATCAGCAAGATGGATAGGACATCCATTCTTGGAGATACCATTGATTACATGAAAGAGCTTCTAGAAAGGATTGGGAAGTTGCAAGAAGAAATGGAGGAGGGGACTAATCAGATAAATCTCATGGGCATTTCTAAGGAGCTAAAGCCAAATGAAGTAATGGTAAGAAATTCCCCCAAGTTTGATGTTGAGAGGAGAGACCAAGACATGAGGATCAGCATCTGTTGTGCCATAAAGCCAGGATTATTACTGTCAACAGTGAACACCTTAGAAGCATTAGGCCTTGAGATTCACCAGTGTGTTATAAGCAGCTTCAATGATTTTTCATTGCAAGCATCTTGTTCAGAGGCATCTGGGCAGAGAAATTGTATGAGCCCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCAGGTTATGGTGGGAGATGTCTCTAG 999 0.4194 MELSQLGFLEELLAPRKDTWNALSTGLNELLPSGWSFDSFEENPALATLNPSFAAFSTPIDHRFECPYGSEAAYPYVDGFTMPELDSSYTRNDESAPVLPQEDNPSVEEIDEEFGFLGSDKQCLEQIKNSCKIEEQVTEIPVFNMGLCGDKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMEEGTNQINLMGISKELKPNEVMVRNSPKFDVERRDQDMRISICCAIKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEASGQRNCMSPEEIKQALFRNAGYGGRCL. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01886 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Seca9g01886 332 Coils Coil 206 226 - -
Seca9g01886 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 163 228 IPR036638 GO:0046983
Seca9g01886 332 CDD ACT_UUR-ACR-like 260 299 - -
Seca9g01886 332 SMART finulus 166 215 IPR011598 GO:0046983
Seca9g01886 332 Pfam Helix-loop-helix DNA-binding domain 166 209 IPR011598 GO:0046983
Seca9g01886 332 Gene3D - 152 226 IPR036638 GO:0046983
Seca9g01886 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 129 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01886 Seca-Chr9 30476127 30478674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01886 150 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 67.760 3.51e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01886 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01886 - - gmx:100806571 590.112