Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01880 ATGACTCATCAAGCCAATGGCTATCCTCTTGAAACAGTGATTGACATAAAGAAACCAGTGAATTTCACTGGGGGTCTTCAGTTTGAATGCCTTACATACACTGTCACAAAGAAGCAGAAAGTTGATGGGAAGTGGTCAAGTGAAGAGGTGGACTTGCTGCATGACATCACTGGTTATGCACCAAAGGGTTGCATCACTGCAGTGATGGGTCCTAGTGGTGCAGGAAAGTCCACTTTTTTGGATGGTCTTGCTGGTAGAATTGCAAGTGGGAGCCTTAAAGGAAGGGTCTCCTTAGATGGGGTAACTGTGAGTGCAAGCTTGATCAAAAGAACTTCAGCATATATCATGCAGGATGATAGGCTTTTTCCAATGCTTACTGTCTATGAAACTTTCATGTTTGCTGCTGATTTCCGCTTGGGACCACTTTCTCTTGCTGATAAGAAGCAGAGGGTAGAAAAATTGATAGAGCAGCTTGGCTTATTATCATCTCGGAACACCTACATAGGAGATGAAGGGACTAGAGGAGTGTCTGGTGGAGAACGTAGAAGGGTCTCAATTGGTGTGGACATCATCCATGGACCTTCACTTCTGTTTCTAGATGAGCCAACTTCAGGTCTAGACTCCACCAGTGCTCACAGTGTGATTGAAAAGGTACATGACATAGCACGAAGTGGCAGCACTGTGATTCTCACCATCCACCAGCCCTCATCAAGAATCCTTTTGCTCCTTGACCATCTGATCATCCTTGCTAGAGGGCAGCTCATGTTTCAAGGGTCACCTAAAGATGTAAGTCTCCACTTGAGTCGCATGTCACGCAAAGTCCCCAAAGGTGAGAGCCCAATTGAGCATCTCATTGATGTGATCCAAGAGTATGATCAGTCTGAGGTTGGAGTTGAGGTACTAGCTGAGTTTGCACGCACAGGGATGAAACCCCCTCCTCTGTCTGGCAAGGAGATGTTACTGTCTTCAGTTGCACCTTCACCATCCCCATCTTTACACAGAGGACACCCTGCATATGAGGGAAAATCTCAAGACTTCTCTTACTCATCACAAGTAAGTAGGAGGATCATAGATGATTTTGATCACAGTGTCAGAAGTCCATATAATAATACATCAATCTCATGGAGTGCCAGTCATAGTGCAGCCTTTTTAAAATTCACACCTTCACGGCTTAGAAATGATCACAAGATGCAAAAACCAACAAGGAGCCATGCTTCCCCTGGCTACTACACATACTCTAGTGAAATCCTCCCAGCCACTCCAACACCACATAGCAGTGACTACACAGTGAATGAGAATGACTACCTCACTCCCTCAAATGCTACACCTGAACATCTTGGCCCAAAGTTTGCAAATTCTTACATAGGAGAGACTTGGATCCTCATGCGCCGTAACTTCATAAACATCAGGCGTACCCCTGAGCTTTTTCTATCAAGATTGATGGTTCTCACCTTCATGGGCTTCATGATGGCCACAATGTTCCACAACCCCAAAGAAACCTTGCAAGGAATCACAAACCGTCTCAGTTTCTTCATCTTCACAGTGTGCCTCTTTTTCTTCTCTTCCAATGATGCTGTTCCAGCTTTTATCCAAGAAAGGTTCATCTTCATCAGGGAAACTTCTCATAATGCCTATAGAGCTTCCTCCTACACCATTGCTAGCCTAATCACTCACATGCCATTTCTTGCTCTCCAAGCTTCAGCCTATGCAGGCATTGTTTGGTTTGCTCTAAAGCTTCGAGGACCTTTTGTGTACTTCTTGCTTGTTCTCTTTGTTTCTCTTCTATCAACCAATTCATTTGTTGTGTTTGTGAGTTCAGTGGTTCCAAATTACATCTTGGGTTATGCTGCAGTGATTGCCTTCACTGCCCTTTTCTTCTTGTTTTGTGGATACTTCTTGAGCAGCAATGACATTCCCATTTACTGGCGTTGGATGAACAAAATTTCAACAATGACATACCCTTATGAGGGGCTTTTGATGAACCAGTTTCAGACCAATCATAGCTTTGGGAAAAATGATGGTGAACCTGTTACTGGTTTTGATATATTGAAGAGTTTTCATATTGGGACTGATGGACACAGGAAGAGGAACATTGTACTAATAATGTTAGGTTGGGCTGTGCTATATAGGATTTTATTTTACTTAGTCCTTCGTTTTGCATCAAAAAACCAGAGGTCATAG 2181 0.4351 MTHQANGYPLETVIDIKKPVNFTGGLQFECLTYTVTKKQKVDGKWSSEEVDLLHDITGYAPKGCITAVMGPSGAGKSTFLDGLAGRIASGSLKGRVSLDGVTVSASLIKRTSAYIMQDDRLFPMLTVYETFMFAADFRLGPLSLADKKQRVEKLIEQLGLLSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARSGSTVILTIHQPSSRILLLLDHLIILARGQLMFQGSPKDVSLHLSRMSRKVPKGESPIEHLIDVIQEYDQSEVGVEVLAEFARTGMKPPPLSGKEMLLSSVAPSPSPSLHRGHPAYEGKSQDFSYSSQVSRRIIDDFDHSVRSPYNNTSISWSASHSAAFLKFTPSRLRNDHKMQKPTRSHASPGYYTYSSEILPATPTPHSSDYTVNENDYLTPSNATPEHLGPKFANSYIGETWILMRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHNPKETLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIASLITHMPFLALQASAYAGIVWFALKLRGPFVYFLLVLFVSLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSNDIPIYWRWMNKISTMTYPYEGLLMNQFQTNHSFGKNDGEPVTGFDILKSFHIGTDGHRKRNIVLIMLGWAVLYRILFYLVLRFASKNQRS. 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01880 726 SMART AAA_5 62 260 IPR003593 GO:0016887
Seca9g01880 726 Pfam ABC transporter 53 204 IPR003439 GO:0005524
Seca9g01880 726 MobiDBLite consensus disorder prediction 320 347 - -
Seca9g01880 726 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524|GO:0016887
Seca9g01880 726 Pfam ABC-2 type transporter 458 663 IPR013525 GO:0016020|GO:0140359
Seca9g01880 726 Gene3D - 38 273 IPR027417 -
Seca9g01880 726 FunFam ABC transporter G family member 6 36 274 - -
Seca9g01880 726 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 24 714 - -
Seca9g01880 726 Coils Coil 144 164 - -
Seca9g01880 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 264 IPR027417 -
Seca9g01880 726 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 276 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01880 Seca-Chr9 30402543 30406215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01880 13 290 Calmodulin-binding Proteins AT2G36910 26.056 3.51e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01880 K05681 - gmx:100804809 1180.62