Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01879 ATGATGGAGTTACCAGATATTTGGATATTGAGATTGGCTGTGGCATGTGCACTTTGTCTGTATATATTTCTCAGATCAGCTTCTGCCTCTGAAGAGTTTGAGAGCATAGCATGCTGTGCTGATTCAAATTACACAGATCCGCTGACCACCTTAAATTATACAACAGATTACAGCTGGTTCTCTGATAAAAGAAGTTGCAGACAAATACCCGAAACTGGGTTAAACAATAGAAGCAATGAAAATGTTCGACTGTTTGATATAGATGAGGGAAAGAGATGTTACAATTTGCCAACAATTAAGAATAAAGTATATCTGATAAGGGGCACATTTCCATTTGACAGCACAAATTCTTCCTTTTATGTTTCAATAGGGGTTACACAATTAGGTGCAGTGAGATCATCCAGGCTCCAGGGCTTGGAAATTGAGGGAGTTTTCAGAGCCACCAAAGACTACATAGACTTCTGCTTAGTGAAGGGGGAGGTTAATCCCTTTATTTCCCAGCTTGAATTAAGGCCATTACCAGAAGAGTATCTACATGATTTGCCTACCAGTGTTTTAAAACTGATAAGCAGAAATAATCTTGGGGGCTCGAAAGATGACATCAGGTTCCCAGTTGACCGAAGTGATAGAATCTGGAAAGCAACTTCAAGTCCATCTTCTGCTTTTCCACTGTCTTTCAATATCAGCAATGTTGACCTCCAAGCTAATGTGACACCACCTCTACAAGTCCTACAAACAGCTATTACCCACCCTGAGCGCTTGGAGTTCATCCACAATGGCCTTGAGACTGAGGATTACGGATACCGTGTGTTTCTCTACTTCCTTGAAATAAATAGAACTCTCAAAGCAGGCCAACGGGTGTTTGACATCTATGTTAACAGTGAGATTAAAAAGGAGAGATTTGATGTATTGGCTGGAGGGTCCAACTACGGATACACTGTCTTGAACGTTTCAGCAAATGGATCACTTAATGTAACCTTGGTCAAGGCATCTGATTCTGAGTTTGGACCTCTTTTGAATGCTTATGAGATCCTACAGGTCCGATCATGGGCTGAAGAGACCAACCAAACAGACGTGGAAGTGATTCAGAAGATGAGAGAAGAACTATTGCTGCAAAACCAAGACAATAAAGCACTGGAAAGTTGGACTGGAGACCCTTGTATACTTTTCCCCTGGCAAGGAATAGCATGTGATGGTTCAAATGGTTCAACAGTTATAACTAAGCTGGATCTTTCTTTGAGTAATCTCAAAGGACCAATTCCTTCCAGTGTCACTGAGATGACCAACTTAAAAATACTGAACCTGAGCCACAACAGTTTCGATGGTTATATCCCCTCATTTCCGCTGTCATCCTTGTTGATATCAATAGATCTGAGCTATAATGATCTTGCGGGAACACTTCCAGAATCGATTACTTCACTGCTACATTTAAAATCATTATATTTTGGCTGCAACCAACACATGAGCGAAAAGGATCCAACAAATTTAAACAGTTCACTAATCAATACAGATTATGGAAGATGCAAATCAAAAGAACACAAATTTGGACAAGGAATCGTTATTGGAGCTATTACATGCGGATCACTTTTGGTTACTTTGGCTGTTGGAATTCTTTTTGTTTGCCGCTACAGACAAAAACTACTTCCATGGGAAGGTTTTGGTGGAAAGAACTACCCAATGGCAACAAATGTAATTTTCTCTTTGCCAAGCAAAGATGATTTCTTCATAAAGTCTGTATCAATTCAGTCATTCACTTTGGAGTATATAGAAGTAGCCACAGAGAGGTACAAAACTTTGATAGGTGAAGGAGGGTTTGGCTCTGTTTATCGGGGCACTCTAAATGATGGTCAAGAGGTGGCAGTAAAAGTCCGGTCAGCCACATCAACTCAAGGAACTCGAGAATTTGATAATGAGCTAAACCTACTTTCTGCAATACAGCATGAGAACCTGGTTCCTCTTCTTGGTTACTGTAATGAAAATGATCAACAAATTCTTGTGTATCCTTTCATGTCCAATGGTTCTTTGCAAGATAGATTATATGGGGAACCAGCAAAGAGAAAAGTATTAGACTGGCCAACTAGACTATCTATTGCTCTTGGTGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCAGGACGTCCTGTAATACACAGGGATGTGAAATCAAGCAATATACTTCTGGATCATAGCATGTGTGCCAAGGTTGCAGATTTTGGTTTCTCAAAATATGCTCCACAGGAAGGAGACAGTAATGTTTCCCTTGAAGTAAGAGGAACCGCAGGATACCTGGATCCTGAGTAA 2304 0.4045 MMELPDIWILRLAVACALCLYIFLRSASASEEFESIACCADSNYTDPLTTLNYTTDYSWFSDKRSCRQIPETGLNNRSNENVRLFDIDEGKRCYNLPTIKNKVYLIRGTFPFDSTNSSFYVSIGVTQLGAVRSSRLQGLEIEGVFRATKDYIDFCLVKGEVNPFISQLELRPLPEEYLHDLPTSVLKLISRNNLGGSKDDIRFPVDRSDRIWKATSSPSSAFPLSFNISNVDLQANVTPPLQVLQTAITHPERLEFIHNGLETEDYGYRVFLYFLEINRTLKAGQRVFDIYVNSEIKKERFDVLAGGSNYGYTVLNVSANGSLNVTLVKASDSEFGPLLNAYEILQVRSWAEETNQTDVEVIQKMREELLLQNQDNKALESWTGDPCILFPWQGIACDGSNGSTVITKLDLSLSNLKGPIPSSVTEMTNLKILNLSHNSFDGYIPSFPLSSLLISIDLSYNDLAGTLPESITSLLHLKSLYFGCNQHMSEKDPTNLNSSLINTDYGRCKSKEHKFGQGIVIGAITCGSLLVTLAVGILFVCRYRQKLLPWEGFGGKNYPMATNVIFSLPSKDDFFIKSVSIQSFTLEYIEVATERYKTLIGEGGFGSVYRGTLNDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNENDQQILVYPFMSNGSLQDRLYGEPAKRKVLDWPTRLSIALGAARGLAYLHTFPGRPVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSNVSLEVRGTAGYLDPE. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01879 767 Gene3D Phosphorylase Kinase; domain 1 566 669 - -
Seca9g01879 767 FunFam Nodulation receptor kinase 562 669 - -
Seca9g01879 767 Pfam Leucine rich repeat N-terminal domain 356 398 IPR013210 -
Seca9g01879 767 FunFam Os07g0541700 protein 670 760 - -
Seca9g01879 767 SUPERFAMILY Protein kinase-like (PK-like) 574 767 IPR011009 -
Seca9g01879 767 Gene3D - 187 348 - -
Seca9g01879 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 716 728 IPR008271 GO:0004672|GO:0006468
Seca9g01879 767 Gene3D Ribonuclease Inhibitor 356 512 IPR032675 -
Seca9g01879 767 Pfam Malectin-like domain 40 347 IPR024788 -
Seca9g01879 767 ProSiteProfiles Protein kinase domain profile. 594 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01879 767 SMART serkin_6 594 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01879 767 SUPERFAMILY L domain-like 376 496 - -
Seca9g01879 767 ProSitePatterns Protein kinases ATP-binding region signature. 600 622 IPR017441 GO:0005524
Seca9g01879 767 Pfam Protein tyrosine and serine/threonine kinase 598 753 IPR001245 GO:0004672|GO:0006468
Seca9g01879 767 FunFam Leucine-rich repeat receptor-like kinase 358 490 - -
Seca9g01879 767 Gene3D Transferase(Phosphotransferase) domain 1 670 767 - -
Seca9g01879 767 PANTHER OS07G0107800 PROTEIN-RELATED 35 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01879 Seca-Chr9 30387758 30396468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01879 10 767 Receptor kinase-like Gene Family AT1G67720 33.875 4.62e-104 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Seca9g01879 Malectin_like 6.1e-49 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01879 - - gmx:100781986 1281.16