Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01873 ATGGAAAGGCAACACTCTCTTCTCTTCTTGCACCATCCAACCAACACTCTCACTCCGCTGACTCATCCTCGATCAATTTCTTCCAAAAACCCTAGGGTGAAGGTGAAAAGAATGGGAAGAGGGAAGATTGTGATTCGAAGGATCGACAATTCTACGAGCAGGCAAGTGACTTTCTCAAAAAGGAGAAAGGGATTGATCAAGAAAGCGAAAGAGCTTGCAATCCTCTGTGATGCAGAAGTTGGACTTGTCATATTCTCCAGCACAGGAAAGCTTTATGAATATGCAAGCAACAGCATGAAATCAGTGATCGAGAGATATAAGACCTGCAAGGAGGAACATCAACAACTAATAAATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGGCAGAAATTTTAAGGCAGCAATTACAGAATCTACAAGAAAACCATCGGCAAATGATGGGAGAACAGCTTTACGGTTTGAGTGTGAAAAACTTGCAAGATCTAGAGAATCAACTCGAAATGAGTCTCCAAGGTGTCCGCATGAAAAAGGGAAAAAATTCTAACAGATGA 555 0.4162 MERQHSLLFLHHPTNTLTPLTHPRSISSKNPRVKVKRMGRGKIVIRRIDNSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTGKLYEYASNSMKSVIERYKTCKEEHQQLINPESEVKFWQREAEILRQQLQNLQENHRQMMGEQLYGLSVKNLQDLENQLEMSLQGVRMKKGKNSNR. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01873 184 SUPERFAMILY SRF-like 39 129 IPR036879 GO:0003677|GO:0046983
Seca9g01873 184 PRINTS MADS domain signature 75 96 IPR002100 GO:0003677|GO:0046983
Seca9g01873 184 PRINTS MADS domain signature 60 75 IPR002100 GO:0003677|GO:0046983
Seca9g01873 184 PRINTS MADS domain signature 40 60 IPR002100 GO:0003677|GO:0046983
Seca9g01873 184 Pfam K-box region 120 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g01873 184 ProSitePatterns MADS-box domain signature. 40 94 IPR002100 GO:0003677|GO:0046983
Seca9g01873 184 ProSiteProfiles K-box domain profile. 123 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g01873 184 SMART madsneu2 38 97 IPR002100 GO:0003677|GO:0046983
Seca9g01873 184 FunFam MADS-box transcription factor MADS-MC 50 122 - -
Seca9g01873 184 Coils Coil 123 150 - -
Seca9g01873 184 ProSiteProfiles MADS-box domain profile. 38 98 IPR002100 GO:0003677|GO:0046983
Seca9g01873 184 Gene3D - 50 152 IPR036879 GO:0003677|GO:0046983
Seca9g01873 184 CDD MADS_MEF2_like 39 115 IPR033896 GO:0000977|GO:0045944
Seca9g01873 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 94 IPR002100 GO:0003677|GO:0046983
Seca9g01873 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 38 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01873 Seca-Chr9 30329555 30345930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01873 38 178 MADS-box Gene Family AT4G37940 79.433 2.35e-79 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca9g01873 K-box 2.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01873 K09264 - gmx:100795778 258.07