Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01871 ATGAAGGTGGTAATAGGAGAGATGAGGAACGGGGTTTTCTTCAGAATGGCTGTACTACTGCTCTGCTTCTCGCTCGCTTCCTCTTCTGAAAATACCTCATCATTTAGTTCTTCCCCTTTGAGAAGAGGTTTAAGGGAGGCCAATTGCCCAGAATCGACGCCTAATCATTCTCCAGTCAAACTTAATACAGAAAATCCTAACCAGGTTGTGATTTACAACGGCATCGTTTCCATCAATTTATCAAGTCCAGTGGGCGATGTCATTGGAATATCACATTCGGGAATTGAAAATGTATTTGACCCTCGAGCTGACATAAATGATAGAGGGTACCTGGACGTTGTTTGGACAGAACCAGGAAAACCTGGCGCCTTTCAAAGAATCCACGGGACAAATTTCTCAGTCATAACAGCGAACGAGAATATAGTGGAAGTTTCATTTTTATCAACATGGACATTAGGCTCAAGTGTCCCCCCCATAAACATAGACAAAAGGTATATATTGAGAAGGGGCGATTCCGGGTTTTATTCTTACGTAATATTTGACCGACCAGAAGGATTCCCTGCAATGACGGTTTATCAAATTAGGATTGTTTTCAAGCTCAGCGACAAAAGGTTCCACTATATGGCTATATCAGATACTATGCAAAGGAGCATGCCAACCGCGATTGATAGAAAAACAGGTAAAGTCCTGGCGTATCCTGAAGCTGTTCTCTTAACCCATCCATCCAACTCAAAATTTAGGGGAGAGGTGGATGACAAATACCAATACTCGATTGAGAACGCAGACAACACTGTTAATGGCTGGATTACCACAGGTTCTAAAGAGAACGTGGGTTTCTGGATCATAACACCCAGTAATGAGTTCCGCAATGGTGGGCCCATTAAGCAAGACCTTACCTCTCATGTTGGCCCCGTTGCCCTCTCCATGTTTGCCAGCACTCATTATGCTGGCAAGGAGCTAAGCATAACATTTGAAGAAGGGGAGGCTTATAAAAAGGTTTTCGGCCCTGTTTTTATATACCTCAACTCTGCATCATATAAAGTTAATTTCCGATCTCTATGGTCTGATGCTGTACAACAGCTATCCAAAGAAGTCAAAAGCTGGCCTTATGATTTCCCCAAATCAAAAGATTTCCTTCCATCCAATCAACGAGGAGCAGTAGCAGGGCGTTTAAAAGTCCAAGAGCGGTTCATCAGGGGAGAGAGTTCTATATATGTTAAAAATGCTTACATTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAACAGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGATGAAAATGGATATTTTTTGATAAAAAATGTTGTACCTGGGAAATACAACTTGTATGCATGGGTTCCTGGCTATATTGGAGATTACAAATATAATGCTACATTCACCATCACACCAGGACGGTCCATCAACATGGGCTCACTTGTATATAGTCCCCCAAGAAATGGTCCAACTCTCTGGGAGATTGGCATCCCAGATCGCTCAGCTGCAGAATTCTATGTGCCAGACCCTTACCCTAAGCTCTTGAACTACTTATACAAGAACAATCCAAGAGACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACTGACTTATATCCAAACAATGATCTCGTTTACACAATTGGTGTTGACAACTACGAAAAGGATTGGTTTTTCGCTCATGTTACCAGGAACATAGGAAATAGTACATACCAGCCAACCACATGGAAGATTGTATTTGAGCTTGAAAATAACACATTGAAAGGAAATTACACACTACAACTGGCCCTGGCATCAGCCCATTATTCTGAAGTGCAGGTTTGGTTCAATGATCCAAGTGGTAGTTCTCCTCATTTCACAACAAAGCTAATTGGTGGAGACAATGTGATAGCAAGGCACGGCATCCATGGATTACATAGATTGTATAGCATAGATGTAGGTAGTGATCTTTTGGTAGAAGGAAATAACACCCTCTATTTGAGGCAGTCAAGAGCCCCAGGTCCTTTCCAAGTGATGATTGAGAACGGCATCGTTTCCGTCAATTTGTCACGACCCGGGGGCTATATCCTTGGAATATCATACAAAGGAATTGACAATGTACTCGAAACTCAAAATGCAGAAAACGATAGAGGGTACATGGACGTTGTTTGGAACGAACCCGGACAACCCAGCATCTTTCAGAGAACCCATGGAACAAGTTTCTCAGTCATAACAGCGGAGGAGAATATAGTGGAGGTTTCATTTTTATTAACATGGACATCTTCTATGGGAGCCTCAAGTGTACCCATAAACATAGACCAAAGGTATATATTGCGAAGTGGCGATTCCGGGTTTTATTCTTACGTAATATTTGACCGACCAAAAGGATTATCTGCAGTGGAGGTTGATCAAATTAGGATTGTTTTTAAGCTTAACGAAGAGAGGTTCCACTACATGGCTATATCAGATACTATGCAAAGGAGCATGCCAGCGATGAGTGATAGAGAAAAGGGTCAACCCCTGGCATATCCTGAAGCTGTTCACTTAACCCATCCATCTAACCCACAATTTACAGGAGAGGTGGATGACAAGTACCAATACTCAATTGAGAACATAGACAACAATGTTAATGGTTGGATTGCCACAGATTCTAGACCAACTATAGGTTTTTGGATCTTAACACCTAGTAATGAATTTCGCAACTGTGGGCCCATCAAGCAAGACCTCACCTCTCATGTTGGCCCAACTGCCCTCTCCATGTTTGTGAGCACCCACTATGCTGGCAAGGAGGTCACCATGTCATTTCAAGAAGGAGAGACTTATAAAAAGGTTTTTGGCCCTGTTTTTGTCTACCTTAATTCTGCATCAAGTGATGTCCATTTCCAATCTCTATGGTCAGATGCTGTGCAACAGCTATCCAAAGAAGTCAAAAGCTGGCCTTATGATTTCCCCAAATCAAAGGATTTCTTTCCATTCAATCAACGAGGAACAGTAGCAGGACATTTACAAGTCCAAGAGCGGTACATCAGGGGAGAGAGTTCTAAATATGCTAAAAATGCTTATGTTGGGCTAGCTTTGCCTGGAGATGCAGGATCATGGCAAAAGGAAAGCAAGGGTTATCAATTCTGGACTCGAACTGATGGAAATGGATATTTTCTGATTAAAAATGTTGTACCTGGGAAATACAACTTGTATGCATGGGTTCCTGGCTATATTGGAGATTACAAATATAATGCTATAATCACCATAACACCAGGACGTTCTATCAATTTGGGCTCACTTGTATATAGTCCTCCAAGAAATGGTCCAACTCTTTGGGAAATTGGCATCCCAGATCGCTCGGCTGCAGAATTCTATGTACCAGACCCTTACCCTGCACTCATGAACAAGTTATACAAGAATGATAACAAAAACAAGTTTAGGCAATACGGGTTGTGGGAACGTTATACTGATATGTATCCAAATCATGATCTCATTTACACGGTTGGTGTTGACAACTATAAAAAGGATTGGTTTTTCGCTCATGTTACCAGGAGCACAGGACATAATACATTCCAACCAACCACATGGAAGATTATATTTAAACTTCAAAATAACATTTTGAGAGGAAATTACACACTGCAACTGGCTCTGGCATCCGCATCTAAATCTGAACTGCAGGTTTGGTTCAATGGGCAGAGTGCTAATCGTCCCCAGTTCACAACAGGGGTAATAGGTGGAGATAGTGTGATAGCAAGGCATGGCATCCATGGATTGCATAGGCTGTATAGCATAGATGTAGGTAGTGATCATTTGGTGAAAGGAATGAACACCATCTATCTGAGGCAGTCAAGAGCACAAGATCCTTTCCAAGGAGTTATGTATGATTATATTCGCTTAGAAAGTCCTCCAACTCCAATTACTTGA 3894 0.4191 MKVVIGEMRNGVFFRMAVLLLCFSLASSSENTSSFSSSPLRRGLREANCPESTPNHSPVKLNTENPNQVVIYNGIVSINLSSPVGDVIGISHSGIENVFDPRADINDRGYLDVVWTEPGKPGAFQRIHGTNFSVITANENIVEVSFLSTWTLGSSVPPINIDKRYILRRGDSGFYSYVIFDRPEGFPAMTVYQIRIVFKLSDKRFHYMAISDTMQRSMPTAIDRKTGKVLAYPEAVLLTHPSNSKFRGEVDDKYQYSIENADNTVNGWITTGSKENVGFWIITPSNEFRNGGPIKQDLTSHVGPVALSMFASTHYAGKELSITFEEGEAYKKVFGPVFIYLNSASYKVNFRSLWSDAVQQLSKEVKSWPYDFPKSKDFLPSNQRGAVAGRLKVQERFIRGESSIYVKNAYIGLALPGDAGSWQTESKGYQFWTRTDENGYFLIKNVVPGKYNLYAWVPGYIGDYKYNATFTITPGRSINMGSLVYSPPRNGPTLWEIGIPDRSAAEFYVPDPYPKLLNYLYKNNPRDKFRQYGLWERYTDLYPNNDLVYTIGVDNYEKDWFFAHVTRNIGNSTYQPTTWKIVFELENNTLKGNYTLQLALASAHYSEVQVWFNDPSGSSPHFTTKLIGGDNVIARHGIHGLHRLYSIDVGSDLLVEGNNTLYLRQSRAPGPFQVMIENGIVSVNLSRPGGYILGISYKGIDNVLETQNAENDRGYMDVVWNEPGQPSIFQRTHGTSFSVITAEENIVEVSFLLTWTSSMGASSVPINIDQRYILRSGDSGFYSYVIFDRPKGLSAVEVDQIRIVFKLNEERFHYMAISDTMQRSMPAMSDREKGQPLAYPEAVHLTHPSNPQFTGEVDDKYQYSIENIDNNVNGWIATDSRPTIGFWILTPSNEFRNCGPIKQDLTSHVGPTALSMFVSTHYAGKEVTMSFQEGETYKKVFGPVFVYLNSASSDVHFQSLWSDAVQQLSKEVKSWPYDFPKSKDFFPFNQRGTVAGHLQVQERYIRGESSKYAKNAYVGLALPGDAGSWQKESKGYQFWTRTDGNGYFLIKNVVPGKYNLYAWVPGYIGDYKYNAIITITPGRSINLGSLVYSPPRNGPTLWEIGIPDRSAAEFYVPDPYPALMNKLYKNDNKNKFRQYGLWERYTDMYPNHDLIYTVGVDNYKKDWFFAHVTRSTGHNTFQPTTWKIIFKLQNNILRGNYTLQLALASASKSELQVWFNGQSANRPQFTTGVIGGDSVIARHGIHGLHRLYSIDVGSDHLVKGMNTIYLRQSRAQDPFQGVMYDYIRLESPPTPIT. 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01871 1297 FunFam Rhamnogalacturonate lyase B 380 480 - -
Seca9g01871 1297 Pfam Polysaccharide lyase family 4, domain II 407 479 IPR029413 -
Seca9g01871 1297 Pfam Polysaccharide lyase family 4, domain II 1014 1087 IPR029413 -
Seca9g01871 1297 CDD RGL4_N 62 345 - -
Seca9g01871 1297 SUPERFAMILY Galactose-binding domain-like 490 670 IPR008979 -
Seca9g01871 1297 SUPERFAMILY Starch-binding domain-like 380 480 IPR013784 GO:0030246
Seca9g01871 1297 Gene3D - 491 669 - -
Seca9g01871 1297 Gene3D - 1098 1290 - -
Seca9g01871 1297 CDD RGL4_C 495 676 - -
Seca9g01871 1297 SUPERFAMILY Galactose mutarotase-like 63 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca9g01871 1297 CDD RGL4_M 990 1090 IPR029413 -
Seca9g01871 1297 MobiDBLite consensus disorder prediction 29 62 - -
Seca9g01871 1297 Pfam Rhamnogalacturonate lyase family 667 857 IPR010325 -
Seca9g01871 1297 Pfam Rhamnogalacturonate lyase family 56 250 IPR010325 -
Seca9g01871 1297 SUPERFAMILY Starch-binding domain-like 986 1088 IPR013784 GO:0030246
Seca9g01871 1297 Gene3D - 62 347 IPR014718 GO:0030246
Seca9g01871 1297 Gene3D - 670 966 IPR014718 GO:0030246
Seca9g01871 1297 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 674 1293 - -
Seca9g01871 1297 Pfam Polysaccharide lyase family 4, domain III 1100 1289 IPR029411 -
Seca9g01871 1297 Pfam Polysaccharide lyase family 4, domain III 493 672 IPR029411 -
Seca9g01871 1297 FunFam Rhamnogalacturonate lyase B 987 1087 - -
Seca9g01871 1297 CDD RGL4_N 673 954 - -
Seca9g01871 1297 SUPERFAMILY Galactose-binding domain-like 1097 1290 IPR008979 -
Seca9g01871 1297 SUPERFAMILY Galactose mutarotase-like 680 952 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca9g01871 1297 CDD RGL4_C 1102 1290 - -
Seca9g01871 1297 CDD RGL4_M 383 483 IPR029413 -
Seca9g01871 1297 Gene3D - 379 481 - -
Seca9g01871 1297 Gene3D - 987 1088 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01871 Seca-Chr9 30230556 30247708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01871 8 672 Polysaccharide Lyase AT4G37950 51.118 0.0 669
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01871 K18195 - gmx:100776664 956.822