Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01869 ATGGCAACACAATATGAAGTTGAGCATCCTAAGAAGGCCTTCGGATGGGCAGCAAGAGATACTTCTGGTTTTCTCTCCCCTTTCAATTTCTCTAGAAGGGAAACGGGTGAGAAGGATGTGGCATTCAAAGTGTTGTACTGTGGGATATGCCACTCAGATCTCCACATGTTGAAGAATGAATGGGGCACTTCCACCTATCCACTAGTCCCGGGGCATGAGATTGTTGGTGTAGTGACAGAGGTGGGAAGCAAAGTACAAAAGTTTAAAGTTGGTGACAGAGTAGGTGTGGGATGCTTGGTTGATTCTTGCCGCTCATGTCAAAATTGTGTTGACAATCTTGAGAATTACTGCCCAAAATATACGCTGACTTATGGTGCCAAATATATTGATGGAACCACCACATATGGAGGTTACTCTGACATTATGGTAACAGACGAGCACTTTGTGGTTGGCATTCCTGATACCTTACCTCTTGATGCTGCTGCACCTCTCCTCTGTGCTGGAATCACAGTGTATAGCCCTTTGAGATATTTTGGACTTGACAAGCCAGGTCTCCATGTGGGTGTGGTTGGTCTCGGTGGATTAGGCCATATGGCTGTCAAGTTTGCCAAAGCTTTTGGGGCTAATGTGACTGTTATCAGTACATCACCCAATAAACAAAAGGAAGCAATAGAACACCTTGGAGCTGACTCGTTTCTAATAAGTCGTGACCAAAATCAGATGCAGGCTGCAATGGGCACTCTGGATGGAATTATTGACACAGTTTCTGCTGATCATCCTCTGTTACCTCTGATTGGTTTACTCAAGTCTCATGGAAAGCTTGTAATGGTAGGAGCACCAGAGAAGCCTCTGGAGTTGCCGGTCTTTCCTTTACTTTTGGGTAAGCGCATATGTAATATATTTCCACAAGTTTTGTACTTATGTCGAAGAAGAAAGATAGTAGCTGGTAGTGGAATTGGCGGGATGAAGGAGACACAAGAGATGATTGACTTTGCGGCAGAACATAATGTAAAACCTGACATTGAAGTCATTCCAATTGATTATGTCAACACAGCAATGGAGCGTCTCCTTAAAGCGGATGTCAAATATCGATTTGTGATTGACATTAAAAACACACTGAAACCAAGTTCTTAG 1134 0.4347 MATQYEVEHPKKAFGWAARDTSGFLSPFNFSRRETGEKDVAFKVLYCGICHSDLHMLKNEWGTSTYPLVPGHEIVGVVTEVGSKVQKFKVGDRVGVGCLVDSCRSCQNCVDNLENYCPKYTLTYGAKYIDGTTTYGGYSDIMVTDEHFVVGIPDTLPLDAAAPLLCAGITVYSPLRYFGLDKPGLHVGVVGLGGLGHMAVKFAKAFGANVTVISTSPNKQKEAIEHLGADSFLISRDQNQMQAAMGTLDGIIDTVSADHPLLPLIGLLKSHGKLVMVGAPEKPLELPVFPLLLGKRICNIFPQVLYLCRRRKIVAGSGIGGMKETQEMIDFAAEHNVKPDIEVIPIDYVNTAMERLLKADVKYRFVIDIKNTLKPSS. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01869 377 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Seca9g01869 377 Pfam Alcohol dehydrogenase GroES-like domain 38 150 IPR013154 -
Seca9g01869 377 SMART PKS_ER_names_mod 17 367 IPR020843 GO:0016491
Seca9g01869 377 PANTHER ALDEHYDE REDUCTASE 6 372 IPR047109 GO:0016616
Seca9g01869 377 Pfam Zinc-binding dehydrogenase 194 294 IPR013149 -
Seca9g01869 377 Gene3D - 167 339 - -
Seca9g01869 377 SUPERFAMILY GroES-like 21 184 IPR011032 -
Seca9g01869 377 FunFam Uncharacterized protein 16 166 - -
Seca9g01869 377 CDD CAD1 14 368 IPR047109 GO:0016616
Seca9g01869 377 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 338 IPR036291 -
Seca9g01869 377 FunFam Cinnamyl alcohol dehydrogenase 167 339 - -
Seca9g01869 377 FunFam Putative cinnamyl alcohol dehydrogenase 6 340 369 - -
Seca9g01869 377 Gene3D - 16 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01869 Seca-Chr9 30208007 30210067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01869 11 376 Monolignol Biosynthesis Gene Families AT4G37990 71.038 2.27e-175 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01869 K23232 - gmx:100816901 611.298