Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01865 ATGATCGTGAAAAAAAAACATGTTAAGCATAACGTAGTTGCTAGGAACTTAATTTACTTTTGGTGCGTCAAAATTTTCAGGGAAACGGGTGAGAAAGATGTGGCATTCAAAGTATTGTACTGTGGGATATGTCACTCGGACCTCCACAGCTTGAAGAACGAATGGGGCAGTTCCACCTATCCACTAGTCCCTGGGCATGAGATTGTTGGTGTAGTGACAGAGGTGGGAAGCAAGGTACAGAAGTTCAAAGTTGGGGACAGAGTAGGTGTGGGATGCTTGGTTGATTCTTGCCGCTCATGTCAAAATTGTGTTGATAATCTTGAGAATTACTGCCCACGATTTACGCTGACTTATGGTGCCAAATACATTGATGGAACCATCACATATGGAGGCTACTCTGACTTTATGGTAACAGACGAACACTTTGTGATTGGAATTCCTGATGGCTTACCTCTTGATGCTGCTGCACCTCTCCTCTGTGCTGGAATCACAGTGTATAGCCCTTTGAGATATTATGGACTCGACAAGCCTGGTCTACATGTGGGTGTGGTTGGTCTCGGTGGATTAGGCCATATGGCTGTCAAATTTGCCAAAACTTTTGGTGGTAAGGTAACAGTAATAAGTACATCACCTTACAAAAAAGAGGAAGCAATAGAACACCTTGGAGCTGACTCGTTTCTGATAAGCCGTGACCAAGATCAGATGCAGGCTGCTATGGGAACTTTGGATGGTATTGTTGACACAGTTTCTGCCGATCATTCCTTATTACCTCTGCTTGGTTTACTAAAGTCTCATGGGAAGCTTGTAATGGTTGGTGGACCTCCGAAGCCTCTGGAGCTGCCAGTGTTTCCTTTACTTATGGGGAGAAAGAAGGTAGCTGGCAGTCTCATTGGAGGGATAAAAGAGACCCAAGAAATGATGGATTTTGCAGCAAAACACAATGTAACACCTGACATTGAAGTCATTCCTATTGATTATGTCAACATAGCAATGGAACGCCTCCTTAAAGCAGACGTGAAATATCCATTCGTGATTGACATTGGAAACACACTGAAACCAAGCTCTTGA 1068 0.4363 MIVKKKHVKHNVVARNLIYFWCVKIFRETGEKDVAFKVLYCGICHSDLHSLKNEWGSSTYPLVPGHEIVGVVTEVGSKVQKFKVGDRVGVGCLVDSCRSCQNCVDNLENYCPRFTLTYGAKYIDGTITYGGYSDFMVTDEHFVIGIPDGLPLDAAAPLLCAGITVYSPLRYYGLDKPGLHVGVVGLGGLGHMAVKFAKTFGGKVTVISTSPYKKEEAIEHLGADSFLISRDQDQMQAAMGTLDGIVDTVSADHSLLPLLGLLKSHGKLVMVGGPPKPLELPVFPLLMGRKKVAGSLIGGIKETQEMMDFAAKHNVTPDIEVIPIDYVNIAMERLLKADVKYPFVIDIGNTLKPSS. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01865 355 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 150 315 IPR036291 -
Seca9g01865 355 SMART PKS_ER_names_mod 14 345 IPR020843 GO:0016491
Seca9g01865 355 CDD CAD1 27 346 IPR047109 GO:0016616
Seca9g01865 355 SUPERFAMILY GroES-like 28 178 IPR011032 -
Seca9g01865 355 Pfam Alcohol dehydrogenase GroES-like domain 32 144 IPR013154 -
Seca9g01865 355 PANTHER ALDEHYDE REDUCTASE 27 350 IPR047109 GO:0016616
Seca9g01865 355 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 65 79 IPR002328 GO:0008270|GO:0016491
Seca9g01865 355 Gene3D - 161 317 - -
Seca9g01865 355 Gene3D - 27 347 - -
Seca9g01865 355 FunFam Cinnamyl alcohol dehydrogenase 161 317 - -
Seca9g01865 355 FunFam Uncharacterized protein 17 160 - -
Seca9g01865 355 Pfam Zinc-binding dehydrogenase 188 311 IPR013149 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01865 Seca-Chr9 30178975 30180516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01865 27 354 Monolignol Biosynthesis Gene Families AT4G37990 74.390 7.65e-165 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01865 K23232 - gmx:100816901 550.821