Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01862 ATGTTAAGGCTCAGAAATCTAAGGCCTACTTCAAGAGATACCAAGTCAAGTTTAAGAGAAGAAGAGATATTGTACTTGTTTCGCTTTTTTCCTATTACATTCATCCCCAATTTGCTTCTGCTGCTGAACGCTTTTACTAATAAATCTGCAGAGGGAAAGACCGATTACCGAGCTAGGATTCGCTTGATTAATCAGGACAAAAATAAGTATAACACCCTGAAATACCATTTTGTGGTTCGATTTGTATTCTTTTTCTTAGTCTACAGGCTTGGATCTTTTGATGATGAAGTAAAAGATATTGTGGAGCTCTCAACAAATGATGTTTATCATATGGCTATGAAAAGTATGCTTAGATGGGTGAGGCTGAACATGGATCCTAAGAAAACTAGAGTTTTCTTCACCAGCATGTCACCTTCTCATGGAAATCGAAGTCATGCACGGACAAATCACAACTTGATCCGTCCTACATGTGATGGATCCATTTACAATACTGATAGTGTTCCTATGCCAATAGTTCTGATAGATAAAGACTCAGATTCTGAAGCAAAAGTTGTGCAGCTTAGCTTTGGTGATCGCCTTGGAGCTCTTCTTGACACGGTGATGTGCCTATTGGAAACTTAA 621 0.3849 MLRLRNLRPTSRDTKSSLREEEILYLFRFFPITFIPNLLLLLNAFTNKSAEGKTDYRARIRLINQDKNKYNTLKYHFVVRFVFFFLVYRLGSFDDEVKDIVELSTNDVYHMAMKSMLRWVRLNMDPKKTRVFFTSMSPSHGNRSHARTNHNLIRPTCDGSIYNTDSVPMPIVLIDKDSDSEAKVVQLSFGDRLGALLDTVMCLLET. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01862 206 PANTHER RIBOSOMAL PROTEIN L5-RELATED 49 82 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca9g01862 206 PRINTS Ribosomal protein L5 signature 69 88 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca9g01862 206 PRINTS Ribosomal protein L5 signature 46 65 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca9g01862 206 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 48 81 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Seca9g01862 206 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 94 150 IPR026057 GO:0016740
Seca9g01862 206 Gene3D - 46 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01862 Seca-Chr9 30168415 30172837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01862 51 82 Cytoplasmic Ribosomal Protein Gene Family AT3G25520 87.500 7.86e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01862 - - gmx:100785571 100.523