Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01861 ATGTCGAAGGTCTCAGTTGGAGAAGAAAACAAAATAGTTGCTGCCTATGGGTGGGCAGCTAGAGACAGCTCGGGAATTCTCTCCCCATTCCACTTTAGTAGAAGAGCAAATGGTGATAACGATATCACCATCGACATACTCTATTCTGGGATTTGCCACTTTGACCTCAACACGGTGAAGAACGAGTTTGGATTGTCCATCTATCCAATGGTTCCTGGGCATGAGATTGTGGGCAAAGTGACAAAGGTGGGTCGCAAAGTCACAAAATTCAGTGTTGGTGACATAGCTGGCGTGGGTGCCTCTGTGGGTTCGTGTGGCTCATGTTCTGACTGCACCAAGGGCTTCTATGTATATTGCCCAAAAATGATTTTAACATATAGTGCGCGCTACCATGATGGATCAATAACCCAAGGTGGATACTCAGATAAGCTAGTGGTTGACCAGAACTTTGCGGTGCTAGTCCCAAAATCTCTGCCACTAGATGGTGCAGCCCCTTTGCTATGTGCTGGAATCACAGTATACAGCCCGATGAAATATTTTGGGCTTGCTCAGCCTGGATTACATTTGGGTGTGGCGGGCCTTGGAGGCCTGGGCCATGTTGCTGTCAAGTTTGCTAAGGCCTTCGGTATGCAGGTCACTGTGATAAGTACTTCTCTTAGCAAGAAAAAGGAAGCATTCGAAAGGCTTGGAGCTGATGCATTCTTGGTTAGTCAAGACCAACAACAGTTGCAGGATGCTATGGGCACAATGGATGCCATTATTGACACGGTTTCAGCTCACCACTCCATCCAATCATTAATTGGCTTATTGAAAACAAGTGGAAAATTGATTTTGGTGGGTGCACCAGCCTTGCCTCTTGAGGTATTAGCTATGCCTTTGCTTTTGGGGAGGAAGATGATTGCTGGTAGTGCAGGAGGGGGGATGGAAGAGATGCAAGAGATGATGGATTTTGCAGCAAAGCACAATATCACAGCAGATATTGAGCTAATTCCCATGGATTACGTGAACACTGCTTTAGAACGAGTTGCCAGGAATGATGTTAAATACCGATTTGTCATCGATGTGGCCAACACTCTTAAGTAA 1083 0.4598 MSKVSVGEENKIVAAYGWAARDSSGILSPFHFSRRANGDNDITIDILYSGICHFDLNTVKNEFGLSIYPMVPGHEIVGKVTKVGRKVTKFSVGDIAGVGASVGSCGSCSDCTKGFYVYCPKMILTYSARYHDGSITQGGYSDKLVVDQNFAVLVPKSLPLDGAAPLLCAGITVYSPMKYFGLAQPGLHLGVAGLGGLGHVAVKFAKAFGMQVTVISTSLSKKKEAFERLGADAFLVSQDQQQLQDAMGTMDAIIDTVSAHHSIQSLIGLLKTSGKLILVGAPALPLEVLAMPLLLGRKMIAGSAGGGMEEMQEMMDFAAKHNITADIELIPMDYVNTALERVARNDVKYRFVIDVANTLK. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01861 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 73 87 IPR002328 GO:0008270|GO:0016491
Seca9g01861 360 Pfam Zinc-binding dehydrogenase 196 319 IPR013149 -
Seca9g01861 360 PANTHER ALDEHYDE REDUCTASE 10 358 IPR047109 GO:0016616
Seca9g01861 360 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Seca9g01861 360 CDD CAD1 17 354 IPR047109 GO:0016616
Seca9g01861 360 Pfam Alcohol dehydrogenase GroES-like domain 40 152 IPR013154 -
Seca9g01861 360 Gene3D - 18 355 - -
Seca9g01861 360 FunFam Cinnamyl alcohol dehydrogenase 169 325 - -
Seca9g01861 360 SUPERFAMILY GroES-like 23 186 IPR011032 -
Seca9g01861 360 Gene3D - 169 325 - -
Seca9g01861 360 SMART PKS_ER_names_mod 25 353 IPR020843 GO:0016491
Seca9g01861 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 323 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01861 Seca-Chr9 30164089 30166037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01861 15 360 Monolignol Biosynthesis Gene Families AT4G37990 65.029 2.03e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01861 K23232 - gmx:100801089 563.533