Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01860 ATGTCACCCGATGACACACCACCCGCAAAGCCCGCAACAACAACAGCAAAAGACCACGACAACCAAGGTTCCGGTGGTGGTCGGAAAACATCCTCCACAAGGCCCCAAGAACAAGGCCTTAAGTGTCCTAGATGTGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACACAACCAAGGCATTTCTGCAAGACATGTAGAAGATACTGGACAAAAGGTGGAGCTTTACGCAACGTTCCCATAGGAGGTGGGTGCAGGAAGAACAAAAAGGTGAAGTCTTCAAGACTCTCATGTGATTCCAAAGACTCTGCTTCCTCTTCAGAGCTTGGTGGTGGCCTCAAGTTCCTTCATGGTCTTTCTCCTTCTGTGGATTTTCACCTTGGTGGGTTACCTTTTCCTAGGCTGCATCATCATCCTACAACCACTCCCATCTATAACCAGTTCTCTTCTTTTGGAGATACTTCAAGTGCTTCCTGTTTCAACCTTGACCCTTCCTCTGGCACCTCAAATTCTTTTGCTCCCCTGAATTACCCGTTTTCTTCAAACGGGTATAATGGTGCAATCCAGGGCATGAGTTCCTTGAACGTTCCAAATAGCGTTGCTTCTTCGATTGAGTCTTTGAGTTCAATGAACCAGGACTTGCACTGGAAGCTGCAGCAGCAGCGATTAGCTATGCTGTTTGGTGGAGATAACCAGAAAGATAATAATAACAGTGTTTCACAGGTTAACCTTGAGAACCAGAACCAGAAACCGCAACCCATTTTGTTTCAGAATCTTGAGATTTCAAAGCCAGGGGTTTTCTCAGTTGGAAATTCCAGAAAAGAATTAGGCCCAAATGGAGATACACTCACAGAGTGGTTCTTTGGGAATTCTTATGGGTCAGTGACTCCTACACCAACTACCAGTAGTGGTGGCCCTGCAGGACATGATAATGCTGCAAGCAACTGGAGCAGTAGTGGTGTTCATGCTTGGGGTGATGTGCAGCACCAATATAGTGCTTTGCCCTAG 1020 0.4647 MSPDDTPPAKPATTTAKDHDNQGSGGGRKTSSTRPQEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSCDSKDSASSSELGGGLKFLHGLSPSVDFHLGGLPFPRLHHHPTTTPIYNQFSSFGDTSSASCFNLDPSSGTSNSFAPLNYPFSSNGYNGAIQGMSSLNVPNSVASSIESLSSMNQDLHWKLQQQRLAMLFGGDNQKDNNNSVSQVNLENQNQKPQPILFQNLEISKPGVFSVGNSRKELGPNGDTLTEWFFGNSYGSVTPTPTTSSGGPAGHDNAASNWSSSGVHAWGDVQHQYSALP. 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01860 339 MobiDBLite consensus disorder prediction 1 42 - -
Seca9g01860 339 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 229 IPR045174 GO:0003700|GO:0006355
Seca9g01860 339 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Seca9g01860 339 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Seca9g01860 339 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Seca9g01860 339 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01860 Seca-Chr9 30149370 30150389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01860 11 339 C2C2-Dof Transcription Factor Family AT5G65590 39.655 2.10e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca9g01860 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01860 - - gmx:100780729 499.975