Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01850 ATGCTCCTCTCCTCTCCTCTCCTCCCAAGAATAACCACCGCTCAAACACATTCCAATTTAGAAGGAACCCTCTTCTTCTTCTTTCTCTCATTTCTCATTCCATCTCTTCAACATTCCTTCCCCTTTCCTTCCTCTCTGTGCCTCAGGCCCTCACCAAATGTAAAGAAGGATTGTCACGTTAACAGTCCTTCTTTCAGATTTCAGGTGCGGGCACGAGCTCTCCAGGTTTGGATTTCCAATCTCTCGAATAAACCGACAAATCATGTTTGTTTAAGAGGGTGGAGAAGAGGGGGAAAAGAAAAAGAAAAAGAAAAAAAGGTAAACCCAGAAATGGCATTGACGTGTATTCACGGAAAAGAGTTTTCGAGCGACGATGAGGGATCTCCGAGAGGAATACTGGACACCTCTGTTTCAGGGACAGAGTCCGACAACAGCGTAAGCGGCACTTTTAGCTCCTGTTCGACGGAGAAGTTGCCGGCAGCAGAAAGACCAGCTAACCGAGAAAGTCACGTGCAGCAATTTATGTCTCTGATTGATGTTTTCAAGTTCAAATCAGTGCGAAGATTATCAGCCATTCCTCTGCTTTCAGCAAGCCACGATATCACTAAGAAAGGCTTCACGAAAAAGTTGGCTCGTATTCGAAGTGCCGAAGATAGTATCGATATTGGGGCTATTCCTACAAAGCCCTCTTGGCGGAACTTCGATTACGCTGAGCTCGCAGCTGCTACTCAAGATTTCAGTTCTGAGAACTTGGTTGGGAAAGGTGGTCATGCTGAAGTATACAAAGGAGTCTTACCCGATGGTCAAGTTATAGCAGTAAAGAGGCTAATGAAGAATGAAAAGGATGCTGCAGATAGAGCTGGTGATTTCTTGACAGAGCTTGGGATTATTGCACACATAAACCACCCAAATGCTACACGCCTTGTTGGGTTTGGGATCGAGCGTGGCCTCTACTTTGTCCTACAATTTGCTCCACATGGCAGCCTTTCTTCTTTGCTTTTTGGTTCTGAATGCTTGGAGTGGAATATAAGGTTCAAGGTAGCTCTTGGGGTAGCAGAGGGATTGCTTTATCTCCATAAGGATTGCCCAAGACGAATCATTCACAGGGATATCAAAGCTTCCAACATATTGCTCAACGAAAATTATGAACCTGAGATTTCAGATTTTGGACTAGCAAAGTGGCTCCCAAATAAGTGGGCCCATCATGTTGTATTCCCAATAGAAGGCACATTTGGGTATTTGGCTCCAGAGTACTTTATGCATGGTGTTGTGGATGAGAAGACTGATGTATTTGCATTTGGGGTCTTGTTACTTGAGCTAATAACAGGTCGTCGTGCAGTTGATTCAGATAGTAGGCAAAGTCTTGTGATCTGGGCCAAGCCATTGCTGGACTCAAACAATGTGAAGGAAATAGCAGACCCCAGATTAGGTGAGAACTATGATCCTACTGAAATGAAGCGTGTGATGATGACAGCTTCTATGTGTGTCCACCATTCATCCTCCAACCGGCCATACATGAATCAGGTTGTGCAGCTACTGAAGGGTGAAGAGACGATTATAGACCCCAATCTAAATTGTGTTACACCAAAATCTCTCATGTTAGAGGCGTGTGACTTAGAAGATTATACTTGCTCTAATTACCTGAAGGACCTCAACCGCCATAGAGAACTAGTCATGGAGTGA 1683 0.445 MLLSSPLLPRITTAQTHSNLEGTLFFFFLSFLIPSLQHSFPFPSSLCLRPSPNVKKDCHVNSPSFRFQVRARALQVWISNLSNKPTNHVCLRGWRRGGKEKEKEKKVNPEMALTCIHGKEFSSDDEGSPRGILDTSVSGTESDNSVSGTFSSCSTEKLPAAERPANRESHVQQFMSLIDVFKFKSVRRLSAIPLLSASHDITKKGFTKKLARIRSAEDSIDIGAIPTKPSWRNFDYAELAAATQDFSSENLVGKGGHAEVYKGVLPDGQVIAVKRLMKNEKDAADRAGDFLTELGIIAHINHPNATRLVGFGIERGLYFVLQFAPHGSLSSLLFGSECLEWNIRFKVALGVAEGLLYLHKDCPRRIIHRDIKASNILLNENYEPEISDFGLAKWLPNKWAHHVVFPIEGTFGYLAPEYFMHGVVDEKTDVFAFGVLLLELITGRRAVDSDSRQSLVIWAKPLLDSNNVKEIADPRLGENYDPTEMKRVMMTASMCVHHSSSNRPYMNQVVQLLKGEETIIDPNLNCVTPKSLMLEACDLEDYTCSNYLKDLNRHRELVME. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01850 560 SUPERFAMILY Protein kinase-like (PK-like) 227 513 IPR011009 -
Seca9g01850 560 Pfam Protein kinase domain 248 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01850 560 PANTHER OS08G0249100 PROTEIN 101 521 IPR046958 -
Seca9g01850 560 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 325 526 - -
Seca9g01850 560 SMART serkin_6 246 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01850 560 Gene3D Transferase(Phosphotransferase) domain 1 325 524 - -
Seca9g01850 560 ProSiteProfiles Protein kinase domain profile. 246 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca9g01850 560 Gene3D Phosphorylase Kinase; domain 1 207 321 - -
Seca9g01850 560 MobiDBLite consensus disorder prediction 120 165 - -
Seca9g01850 560 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 221 323 - -
Seca9g01850 560 MobiDBLite consensus disorder prediction 133 156 - -
Seca9g01850 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 366 378 IPR008271 GO:0004672|GO:0006468
Seca9g01850 560 ProSitePatterns Protein kinases ATP-binding region signature. 252 274 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01850 Seca-Chr9 30012254 30017390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01850 219 521 Trihelix Transcription Factor Family AT5G38560 44.268 9.22e-72 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca9g01850 Pkinase 2.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01850 - - gmx:100818314 748.043