Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01849 ATGGCTCGTGCTACTACTACTACCAACTCTAACTGGCTATCGTTTTCGCTCTCGCCAATGGAAATGCCTCAGTTCGTTCAATACGACGCCGCTTCCTCCGCTACTTCCTCCCATCATTACTTCCTTGACAATTTGTACGCCAATGGGTGGGGAAACCCCAAGTCTCAGTTACTATACGGTGCGCAAGTGGAGCAAAATCTGAACCACAGTAACAGGGTAGAGCAACAACCACCGTCGCTTCTTTTCATGGACTCTTCGCACTCGCAGCACGTGAACCACGCGCCGCCACCGAAGCTTGAGGATTTTCTAGGCGATAGCCAGACGGAGACTCAGGATTCTTCCCTCACTCACATATATGACCATCACCATGGCTCTGCTTACTTCGGTGGTGACCACCAAGATCTCAAGGCTATTGCTGCCTTCCAAGCTTTCTCTACCAACTCTGGCTCAGAGGTTGATGACTCTGCTTCCATCGGAAAAACGCAACCAGGTTGCACCAACGAGTTCGGGACTCACTCTATTGAGTCTTCTGCCAACGAGTTAGCCTTCTCTGCAACCGCCGCCGCCGCGACCGGGACTTTGTCCCTTGCCGTCGCGCAGAGCTCCGAGGAGACTCTCGTTGCGGCTGATTCCGACAGCTCGAAGAAGATCGCCGATACCTTCGGCCAGAGAACTTCAATTTACAGAGGTGTAACCAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGAAGGGAGGGTCAGGCTAGGAAAGGGCGTCAAGGGTTATCAGGTGGATATGACAAGGAAGAAAAGGCCGCGAGGGCCTATGATTTGGCAGCTCTAAAGTACTGGGGTCCCACCGCTACCACCAACTTCCCTGTTTCCAACTATACAAAGGAATTGGAAGAGATGAAGCATGTAACAAAGCAAGAATTTATTGCATCACTGAGAAGGAAAAGTAGTGGTTTTTCCAGAGGAGCTTCCATCTATAGGGGTGTTACAAGGCATCACCAACAAGGTAGATGGCAAGCAAGAATTGGCCGTGTTGCTGGAAACAAAGATCTGTATTTGGGAACATTCGCAACTGAAGAGGAAGCAGCAGAGGCATACGATATTGCTGCCATAAAATTCAGAGGTGCAAACGCAGTAACCAATTTTGAGATGAATAGATATGATGTGGAAGCTATAATGAAGAGTTCTCTTCCAGTTGGTGGGGCAGCTAAACGCTTGAAGCGTTCCTTAGAATCAGAGCAGAAAGCTCCTCTGAGCAATAGTCAGCAGAACCCACAGTGTGGAACCGTGAGTAACAGCATCAATTTCTCGGCCATTCATCAGCCAGTTGCTTCTATCCCTTATGGAATTCCGTTTGATTCGACAACAGCATATTATCATCATAACCTTTTCCAACATTTTCATGGTACCAACGATGGCACTGCAGAGTCTGCTGTAACTTCCACCAATGCAACTGGACTGACTGCTCTGCCAACATCAGCAGCTGAGTTCTTCATATGGCCTCATCAGTCCTATTGA 1530 0.4882 MARATTTTNSNWLSFSLSPMEMPQFVQYDAASSATSSHHYFLDNLYANGWGNPKSQLLYGAQVEQNLNHSNRVEQQPPSLLFMDSSHSQHVNHAPPPKLEDFLGDSQTETQDSSLTHIYDHHHGSAYFGGDHQDLKAIAAFQAFSTNSGSEVDDSASIGKTQPGCTNEFGTHSIESSANELAFSATAAAATGTLSLAVAQSSEETLVAADSDSSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGLSGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGANAVTNFEMNRYDVEAIMKSSLPVGGAAKRLKRSLESEQKAPLSNSQQNPQCGTVSNSINFSAIHQPVASIPYGIPFDSTTAYYHHNLFQHFHGTNDGTAESAVTSTNATGLTALPTSAAEFFIWPHQSY. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01849 509 SUPERFAMILY DNA-binding domain 226 295 IPR016177 GO:0003677
Seca9g01849 509 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 89 430 - -
Seca9g01849 509 Pfam AP2 domain 329 379 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 Pfam AP2 domain 227 285 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 CDD AP2 226 295 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 SUPERFAMILY DNA-binding domain 328 388 IPR016177 GO:0003677
Seca9g01849 509 FunFam AP2-like ethylene-responsive transcription factor 328 389 - -
Seca9g01849 509 ProSiteProfiles AP2/ERF domain profile. 329 387 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 FunFam AP2-like ethylene-responsive transcription factor ANT 226 295 - -
Seca9g01849 509 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 PRINTS Ethylene responsive element binding protein signature 369 389 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 Gene3D AP2/ERF domain 329 389 IPR036955 GO:0003700|GO:0006355
Seca9g01849 509 Gene3D AP2/ERF domain 227 295 IPR036955 GO:0003700|GO:0006355
Seca9g01849 509 CDD AP2 328 387 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 SMART rav1_2 329 393 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 SMART rav1_2 227 299 IPR001471 GO:0003700|GO:0006355
Seca9g01849 509 ProSiteProfiles AP2/ERF domain profile. 227 293 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01849 Seca-Chr9 30004562 30009490 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01849 82 509 AP2-EREBP Transcription Factor Family AT5G10510 57.447 2.24e-161 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca9g01849 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01849 K09285 - gmx:100775390 768.459