Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01837 ATGGCTCTTCCCGGTTCACTGCAGCTGTCCCATGGATTGGGACTTTGCAGGAACCTGGGCTACAATAAACATCCGAGGGTAACAGGAAGATGCAAGTTACATTTATCAAATGCAGGTTCCTCATATCCTGTTTTGTTCATGAAACAGGACTACTGGGGTTTTCAACACCTTCGTCATATAAGCAGGTCAACACATACATTGTCTTGCAAATCTCGCTCTTTTAAGTGTCATTGTTTTCTAGTGCCAGGCCAACCAAGTAAGCTCCCTACTGTTGAGGTGGCTACTACAGTGCTGACAAGGTGTTGTAATGTGTTACAAAATAGTCCAGTCCTTGTAAAGTTGATTCCTGCTGTTGGCATTATCATTTTTGCAGTATGGGGTGTCGGTCCATTAATGTTTCAGACAAGGAAACTGTTTTTTCAGAGGAGTGATAATAGTTGGAAGAAAAGTACCACTCATTATATAGTAACTTCTTACCTTCAGCCATTGCTGTTATGGACTGGAGCCATACTTATTTGCAGAGCATTGGAGCCACTAATTCTACCTACAGAAACTGGTCAGGTTGTTAAGGAACGGCTTTTGAATTTTGTAAGATCATTGTCGACTGTACTGGCCTTTGCCTATTGTTTATCAAGTGTAATTCAACAAGCACAGAAATTTTTCACGGAGAGTGCTGATGCAAGTGAGACGAGAAATATGGGATTCCAATTTGCAGGCAAAGCTGTTTATTCTGCAGTATGGATTGCTGCCTTTTCATTGTTCATGGAATTGCTGGGCTTCTCTACCCAGAAATGGGTTACTGCAGGAGGTCTTGGGACAGTGTTGTTAACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCGCGATGATTCATGCAACCCGGCCATTTGTGGTTAATGAATGGATTCAAACAAAGATAGAAGGATATGAGGTTTCTGGTACTGTTGAGCATGTTGGTTGGTGGTCACCAACAATTATAAGAGGTGAAGATCGTGAAGCTGTGCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTAGTCAGAAAACACATTGGCGAATCAAAACCCACCTGGCCATTAGTCATTTGGATGTAAATAAGATTAATAACATTGTTGCTGACATGCGGAAAGTATTAGCCAAAAATCCTCAAGTTGAGCAGCAGAGGTTGCACAGGAGAGTGTTTTTGGACAATATAAATCCTGAAAATCAGGCTCTTATGATTCTGGTGTCTTGTTTTGTCAAGACCTCACATTTTGAAGAATATTTATGTGTTAAGGAAGCCATACTATTGGACCTTCTTAGAGTTATCGGCCATCACCGGGCTCGACTTGCAACACCAGTCCGTACCCTGCAGAAAATATACAGTGATGCTGACTTGGAGAACATACCATATGCAGATTCCACATTTAGTGGTGCTGGAACAGTATCTAACCGTCCATTATTAATGATTGAATCATCTCACAAGATCAATGGAGATGATAAGATGAAAATTCGATCAGCACGACCAGCTGTTGATCAAGATAACAAGACTGCACGATCCAAACATGAAACAAAGACAGACGACAAGGCAGGACCAGCAGGAGTACCAGATAACAAGGTTAGAGGAACTCAAGATGACTCTGAGGTGGATACCAAAGTTGTGGTATCTATTTCTGATGCAAATGGAAACTCTAAGACCGCTGTGACACCCAGACCTGATCCTGAAGTGGGTGAAAACAAGCCACTGAAATCAAATTCAAACAAGGCAAATGTGGAGGTTCCAGATATGTCTTTTAACTCCGAAATATCTGCTTTGGTAGTGGATAATTCAACCCAGAAGGACATCCATGTCAAACAATCCAAGGTTGAGACCATTAAAAACATCAAGCCGAACATTGACTCTGACAATGTAGTTTCCTCCTCCTCCTCGACTAATAATGCTGACAAAGCAAGTGGACTTCCTACGAATATGCCAACAAAACAGCAAGGAGAAAGGAAACCTATTGCACAGCCTCATGCATCCAGGCCTGTTCTTGAAGAGAACATAGTACTGGGTGTTGCATTGGAGGGATCAAAGAGGACCCTTCCCATTGATGAAGGGATTGACACTATGACAACTCAAGAGTCAAAGGAAATGGCTACATTCCAGGGCGGAAATGGACTTCCAAAGGCTGCAGACGGGAATGTCAAGTAA 2193 0.4213 MALPGSLQLSHGLGLCRNLGYNKHPRVTGRCKLHLSNAGSSYPVLFMKQDYWGFQHLRHISRSTHTLSCKSRSFKCHCFLVPGQPSKLPTVEVATTVLTRCCNVLQNSPVLVKLIPAVGIIIFAVWGVGPLMFQTRKLFFQRSDNSWKKSTTHYIVTSYLQPLLLWTGAILICRALEPLILPTETGQVVKERLLNFVRSLSTVLAFAYCLSSVIQQAQKFFTESADASETRNMGFQFAGKAVYSAVWIAAFSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLDNINPENQALMILVSCFVKTSHFEEYLCVKEAILLDLLRVIGHHRARLATPVRTLQKIYSDADLENIPYADSTFSGAGTVSNRPLLMIESSHKINGDDKMKIRSARPAVDQDNKTARSKHETKTDDKAGPAGVPDNKVRGTQDDSEVDTKVVVSISDANGNSKTAVTPRPDPEVGENKPLKSNSNKANVEVPDMSFNSEISALVVDNSTQKDIHVKQSKVETIKNIKPNIDSDNVVSSSSSTNNADKASGLPTNMPTKQQGERKPIAQPHASRPVLEENIVLGVALEGSKRTLPIDEGIDTMTTQESKEMATFQGGNGLPKAADGNVK. 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01837 730 MobiDBLite consensus disorder prediction 499 590 - -
Seca9g01837 730 Gene3D - 193 297 - -
Seca9g01837 730 SUPERFAMILY Sm-like ribonucleoproteins 283 353 IPR010920 -
Seca9g01837 730 MobiDBLite consensus disorder prediction 630 676 - -
Seca9g01837 730 Pfam Mechanosensitive ion channel 240 446 IPR006685 GO:0016020|GO:0055085
Seca9g01837 730 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 1 713 IPR045042 -
Seca9g01837 730 MobiDBLite consensus disorder prediction 499 534 - -
Seca9g01837 730 MobiDBLite consensus disorder prediction 549 568 - -
Seca9g01837 730 MobiDBLite consensus disorder prediction 630 663 - -
Seca9g01837 730 Gene3D - 299 354 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01837 Seca-Chr9 29855946 29863775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01837 9 540 Mechanosensitive Ion Channel Family AT5G10490 63.956 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01837 K22047 - gmx:100789444 1172.15