Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01833 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCGACGGCGAGGCAGGTAACGTTCTCGAAGCGACGAAGAGGGCTTTTCAAAAAAGCGGAGGAGCTTTCTGTTCTGTGTGATGCAGATGTTGCCCTTATCATCTTCTCTTCCACTGGCAAACTCTTCGAGTACTCCAGCTCAAGCATGAGGGAAATACTTGAAAGGCATCATTTGCACTCCAAAAACCTATCAAAGCTGGAACAACCATCTCTCGAGTTGCAGTTAGTTGAAAACAGCAACTGCTCCAGATTGAGCAAGGAAGTTGCTGAAAAGAGCCATCTGCTAAGGCAGCTTAGAGGAGAGGATCTTCAAGGTTTAAATATCGATGAATTACAACAATTGGAGAGGTCCCTCGAAACTGGATTGGGCCGTGTAATTGAAAAGAAGGGAGAGAAGATCATGAAGGAGATTAATGATCTTCAAAGAAAGGGAAGGCAATTGATGGAAGAGAACGAGCGACTAAAACGTCATGTGGCTGGCATAATTAATGGGAAAAGGCATGGTGGTAATTCTGAGTCAGAGAACATAGTTTATGAGGAAGGTCAATCTTCAGAGTCTGTTAACATTTGCAGCTCCACTGGACCTCCACAAGACTATGAAAGCTCAGACACATCGCTCAAGTTGGGGCTTCCATACTCCGGCTGA 684 0.4503 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSSSMREILERHHLHSKNLSKLEQPSLELQLVENSNCSRLSKEVAEKSHLLRQLRGEDLQGLNIDELQQLERSLETGLGRVIEKKGEKIMKEINDLQRKGRQLMEENERLKRHVAGIINGKRHGGNSESENIVYEEGQSSESVNICSSTGPPQDYESSDTSLKLGLPYSG. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01833 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca9g01833 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca9g01833 227 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Seca9g01833 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca9g01833 227 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Seca9g01833 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca9g01833 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Seca9g01833 227 Coils Coil 143 170 - -
Seca9g01833 227 MobiDBLite consensus disorder prediction 176 227 - -
Seca9g01833 227 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Seca9g01833 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca9g01833 227 FunFam Transcription factor, MADS-box 13 83 - -
Seca9g01833 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca9g01833 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca9g01833 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca9g01833 227 MobiDBLite consensus disorder prediction 188 227 - -
Seca9g01833 227 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01833 Seca-Chr9 29802776 29809559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01833 1 227 MADS-box Gene Family AT2G22540 70.954 8.94e-114 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca9g01833 K-box 7.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01833 - - gmx:100789126 390.193