Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01828 ATGCATCATGTTCGAAATTACTATAACTCAGAAATGCTAAGAAGTAGCTTTCCAAGGCCATTCATCTCACATACATACAAAAACAGTTTCTCAAAGCCAAGATCAAAGGCAGAGATCAAATTGCTTGCTGCTAAGAAACATAGTGAAGCAGAAAAGAGACGTAGAATGCGAATCAATGGTCAATATGACACCCTCCGCAGTATCCTCCCCAATATAATCAAAAAGGACAAGGCCTCAGTACTGGCAGAGACAATCAAGCAAGTGAAGGAGCTGAAGAAAATAGTATCAAAAGTGGAAGAAAATAATATTGGTAGCTCAAAGGAGGTTAAGTTTCCAAGTGGGGCAGACAAACTGAGTTTGGAAAAATGTAATGATGATGAGGGTCTAGTGAAGGCCATGTTGAGTTGTGAGGATAGGCCAGGATTGATGTCAGCCATAGCAGGGGCACTGGGGTCAGTGAAAGCCAAAGCAGTAAAGGCTGAGATGGTGATGGTAGGTGGAAGAACCAGGAGTGTGTTGTGGGTAAAAGGTCATGGGAATGAAGGTCTGGGGATGCTCAAGAGTACTTTAAGGGTTGCCATGATGCACAAGCCAGCCTATAAGATGCGTCGGTTTAATCAACAATAA 627 0.4274 MHHVRNYYNSEMLRSSFPRPFISHTYKNSFSKPRSKAEIKLLAAKKHSEAEKRRRMRINGQYDTLRSILPNIIKKDKASVLAETIKQVKELKKIVSKVEENNIGSSKEVKFPSGADKLSLEKCNDDEGLVKAMLSCEDRPGLMSAIAGALGSVKAKAVKAEMVMVGGRTRSVLWVKGHGNEGLGMLKSTLRVAMMHKPAYKMRRFNQQ. 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01828 208 Coils Coil 81 101 - -
Seca9g01828 208 PANTHER TRANSCRIPTION FACTOR BHLH30 28 197 IPR045847 GO:0003700|GO:0006355
Seca9g01828 208 SMART finulus 48 97 IPR011598 GO:0046983
Seca9g01828 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 100 IPR036638 GO:0046983
Seca9g01828 208 Gene3D - 42 102 IPR036638 GO:0046983
Seca9g01828 208 SUPERFAMILY ACT-like 133 190 IPR045865 -
Seca9g01828 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 91 IPR011598 GO:0046983
Seca9g01828 208 Pfam Helix-loop-helix DNA-binding domain 45 91 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01828 Seca-Chr9 29718212 29719606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01828 41 175 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.000 4.77e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca9g01828 HLH 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01828 - - gmx:102667782 287.73