Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01818 ATGGAATTCGAAGATCAAGAGGAGCAAGAGGAAGAGCTATGTATGGCGGCAGCGAGTTACGACTCACTCGCTAACCCCTCCCGAGTCAAGATGCCAGGTGGCACCGAACCTATCATGGCTCAGCCTCTCAGGAATAACAACGGTAGCGGTGCTGTCAAAGCCAGGTACAGAGAGTGTCTGAAAAACCACGCCGTCGGAATCGGCGGCCACGCCCTCGACGGCTGCGGAGAGTTCATGCCGGCAGGAACCGAAGGCACCCTCGACGCTCTAAAATGCGCCGCCTGTAACTGCCACCGCAACTTCCACCGTAAAGAGACAGACACCCCTGCCATCACCGCCGGAGACCCGTATTTGCTGACTCACCACCACGTTCCTCCGCCACCGCCGCAGTTCGCGGCGTACTATCGGACGCCGACGGGATATTTGCACGTGGCGGGGCAGCAGAGAACGGCGGGGACGCTGGCGCTGCCGTCGACCTCCGGTGCCGGAGGTGGCGGTGGAGGGACCCAGAGCACTCGGGAGGATCAGGAGGATGTTTCGAACCCGAGTGCAGGAGGAGGAAGTTCGAAGAAGAGGTTCAGGACAAAGTTCACGCAGGAACAGAAGGACAAGATGCTGGAGTTGGCGGAGAGATTGGGTTGGAGGATTCAGAAACACGATGAAGGTGTGGTCCAGGATTTCTGTAACGACACTGGTGTCAAACGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTTGGTAAGAAGCCCTAG 762 0.5774 MEFEDQEEQEEELCMAAASYDSLANPSRVKMPGGTEPIMAQPLRNNNGSGAVKARYRECLKNHAVGIGGHALDGCGEFMPAGTEGTLDALKCAACNCHRNFHRKETDTPAITAGDPYLLTHHHVPPPPPQFAAYYRTPTGYLHVAGQQRTAGTLALPSTSGAGGGGGGTQSTREDQEDVSNPSAGGGSSKKRFRTKFTQEQKDKMLELAERLGWRIQKHDEGVVQDFCNDTGVKRHVLKVWMHNNKHTLGKKP. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01818 253 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 249 - -
Seca9g01818 253 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
Seca9g01818 253 MobiDBLite consensus disorder prediction 154 195 - -
Seca9g01818 253 NCBIfam homeobox domain, ZF-HD class 190 246 IPR006455 -
Seca9g01818 253 Gene3D - 174 251 - -
Seca9g01818 253 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Seca9g01818 253 MobiDBLite consensus disorder prediction 154 188 - -
Seca9g01818 253 SUPERFAMILY Homeodomain-like 178 251 IPR009057 -
Seca9g01818 253 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Seca9g01818 253 FunFam Zinc-finger homeodomain protein 2 176 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01818 Seca-Chr9 29592600 29593361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01818 1 249 ZF-HD Transcription Factor Family AT4G24660 49.012 1.81e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca9g01818 ZF-HD_dimer 1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01818 - - gmx:100808910 343.584