Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca9g01808 ATGGAGGAAGCCCTCAGGCGTCTCAACGGTATGGCCCCGATTCCTGAACCCGACCCGCAGGGTCCCGACAACCAGAAGAAGTCTTCCGCCACCAACAAGAGGACGCTACGAGAAAACAACGGCGGTGGCGGAGGAGGAGGAGTGATGAGGTACCGCGGCGTGAGGCGCAGGCCGTGGGGCCGTTACGCCGCCGAGATAAGAGACCCACAGTCAAAGGAACGGCGCTGGCTGGGCACGTTTGACACGGCGGAGGAAGCCGCCTGTGCCTACGACTGTGCCGCACGTGCGATGCGTGGCTTGAAGGCTCGCACGAACTTCGTGTACCCAACCTCTCCACCTCACCACTCTTCCACCACCCAACACCCACTTTTCCCTCCCTTCAACTTCCCCAAGCAACCTTTCAACAAAACCACCACCCCTAACCGCCACGTGTCCACCTGTTGGCCATCTTGCTCTGATCCTCACGCTGTTGAGTACTCACCTGCTTCACCACACCACCAGCCAAACTCTTCTTCCCTTGACATGCTTCTGTTTCGTGAGTTTCTCAACTCTTCTTCCTCATCATCTAACCCTTCCTTGGTTTCACACTTTTACGACAACAAGAGCATTTCTTCCTCCTCCTCCTCTTCGTCCATTCCCACCCCTTTTCTCCCAGGTTGCTGTTTGATGAATTCATGTGGAGGCAGTGCTAATAGCGTCTGTGGCTCTTCTTCCCTAAACATCAACACTAATCCCGCTTTTGTCGCCAACAAAACCACTGAAGCTGATGAGGAAGACTCGGAATTCTTTCCGAGAGAGTCTTCTGACTCTGGATTGTTGGAAGAGATAGTCCATAAATTCTTGCCTAAATCAAAGCCGAAAAAACGCCAGAGTCCCCCAAAGGCAGAGACTTTTTACAACCCTGAATCAATTCCTCCACCTGCACCTCATGAAATGCTCTTTTCCACCCCTCAATGTCACAACGAAAGGAAAAGGGGGATTCCCAAGAACGAGGGTTTTGGCGTCTCTTTTGATCACCAACACCAAAGTTTCACCATGCAGCAATTGGACGCTTTTAATAGCGTGCAGCAGGGTATGCCTCTGGGGAATGAACAACTCATGATGAATCACGCGGAGAGTTACTCTATCATACAAGACATTTTTCAATACCCAGAGCTTATCAACACTTTTGCACTCAGGATGCAAAATGCTTAG 1194 0.5151 MEEALRRLNGMAPIPEPDPQGPDNQKKSSATNKRTLRENNGGGGGGGVMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGLKARTNFVYPTSPPHHSSTTQHPLFPPFNFPKQPFNKTTTPNRHVSTCWPSCSDPHAVEYSPASPHHQPNSSSLDMLLFREFLNSSSSSSNPSLVSHFYDNKSISSSSSSSSIPTPFLPGCCLMNSCGGSANSVCGSSSLNINTNPAFVANKTTEADEEDSEFFPRESSDSGLLEEIVHKFLPKSKPKKRQSPPKAETFYNPESIPPPAPHEMLFSTPQCHNERKRGIPKNEGFGVSFDHQHQSFTMQQLDAFNSVQQGMPLGNEQLMMNHAESYSIIQDIFQYPELINTFALRMQNA. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca9g01808 397 FunFam Ethylene-responsive transcription factor 2 49 108 - -
Seca9g01808 397 MobiDBLite consensus disorder prediction 1 52 - -
Seca9g01808 397 Gene3D AP2/ERF domain 49 108 IPR036955 GO:0003700|GO:0006355
Seca9g01808 397 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Seca9g01808 397 MobiDBLite consensus disorder prediction 280 314 - -
Seca9g01808 397 MobiDBLite consensus disorder prediction 22 38 - -
Seca9g01808 397 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Seca9g01808 397 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Seca9g01808 397 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Seca9g01808 397 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 29 251 - -
Seca9g01808 397 SUPERFAMILY DNA-binding domain 50 107 IPR016177 GO:0003677
Seca9g01808 397 CDD AP2 50 106 IPR001471 GO:0003700|GO:0006355
Seca9g01808 397 Pfam AP2 domain 50 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca9g01808 Seca-Chr9 29415091 29416284 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca9g01808 48 295 AP2-EREBP Transcription Factor Family AT1G24590 40.316 2.79e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca9g01808 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca9g01808 - - gmx:102669715 337.035